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clean up snippets wrt Rdesigneur and/or moogli #19

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1 of 3 tasks
hrani opened this issue Jan 27, 2017 · 1 comment
Closed
1 of 3 tasks

clean up snippets wrt Rdesigneur and/or moogli #19

hrani opened this issue Jan 27, 2017 · 1 comment
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@hrani
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hrani commented Jan 27, 2017 •
edited by dilawar
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  • testRdesigneur.py
    Warning: meshLambda argument is deprecated. Please use 'diffusionLength' instead.
    For now rdesigneur will accept this argument.
    Error: rdesigneur: Prototype build failed: "elec Proto: global function 'makeCellProto()' not known."

  • testWigglySpines.py
    NeuroMesh::updateShaftParents: may be misaligned
    terminate called after throwing an instance of 'std::bad_alloc'
    what(): std::bad_alloc
    Aborted (core dumped)

  • rxdSpineSize.py
    Warning: Dsolve::setNinit: Eref z out of range 1, 0
    Traceback (most recent call last):
    File "rxdSpineSize.py", line 293, in
    showVisualization()
    File "rxdSpineSize.py", line 191, in showVisualization
    makeModel()
    File "rxdSpineSize.py", line 120, in makeModel
    rdes.buildModel( '/model' )
    File "/home/harsha/Jan/moose-core/python/rdesigneur/rdesigneur.py", line 199, in buildModel
    self.buildAdaptors()
    File "/home/harsha/Jan/moose-core/python/rdesigneur/rdesigneur.py", line 489, in buildAdaptors
    self._buildAdaptor( mesh, i[2], i[3], name, i[1], False, i[4], i[5] )
    File "/home/harsha/Jan/moose-core/python/rdesigneur/rdesigneur.py", line 1230, in _buildAdaptor
    elecComptList = moose.vec( mesh.elecComptList[0].path + '/../spine' )
    IndexError: tuple index out of range
dilawar pushed a commit that referenced this issue Sep 18, 2018
Two more broken scripts. Related to #19.
66b451c
@dilawar
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dilawar commented Sep 18, 2018

Both rxdSpineSize.py and testWigglySpine.py emit message Not isModelfromKkit and fails. Both are marked broken. See #30 . Closing it in favor of #30 .

@dilawar dilawar closed this as completed Sep 18, 2018
dilawar added a commit that referenced this issue Sep 18, 2018
@dilawar
Travis fix (#40)
2448068 
* Only spaces, no tabs please.

* Indentation fixes.

* Some fixes to travis.

* Use virtualenv python [skip ci].

* Removed --user option, virtualenv disables this option.

* instally numpy as well.

* Temp commit [skip ci].

* Now we can start cleaning up the failing scripts. Travis enviromment is set.

* Removed data file. [skip ci]

* removed duplicate files.

* Removed some large files.

* Timeout is 20 second now.

* All crosscompartment snippets are broken.

* If pyqwt5 not found, exit.

* Fixes:
- use moose.elements whereever possible.

* Two scripts marked as broken.

* nml2 scipts are failing on python3. Most likely due to NeuroML/NeuroML2#116. Added a test at the begining of script.

* Fixed python3 related issue. float -> int in indexing; and if a module
is not found, quit(0) rather than quit(1).

* Fixed script.

* Removed duplicate.

* This passes locally with python3.

* renamed to .py.BROKEN #13.

* Two more broken scripts. Related to #19.

* If pyqt4 not found, do not run the script which requires it.
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