singularityMixedFEniCS.recipe

Bootstrap: docker
From: ceciledc/fenics_mixed_dimensional:latest

%environment
    export NOW=1
%post
    export GMSH_VERSION=4.5.6
    apt-get -y update
    apt-get -y install software-properties-common ffmpeg curl wget build-essential python3 python3-pip python3-tk
    apt-get -y update
    cd /usr/local
    wget -nc --quiet http://gmsh.info/bin/Linux/gmsh-${GMSH_VERSION}-Linux64-sdk.tgz
    tar -xf gmsh-${GMSH_VERSION}-Linux64-sdk.tgz && \
    rm gmsh-${GMSH_VERSION}-Linux64-sdk.tgz
    echo "export PATH=/usr/local/gmsh-${GMSH_VERSION}-Linux64-sdk/bin:$PATH" >> $SINGULARITY_ENVIRONMENT
    echo "export PYTHONPATH=/usr/local/gmsh-${GMSH_VERSION}-Linux64-sdk/lib:$PYTHONPATH" >> $SINGULARITY_ENVIRONMENT
    apt-get -y install python3-lxml nano
    python3 -m pip install --force-reinstall numpy scipy matplotlib pandas ffmpeg-python openpyxl vtkplotter
    python3 -m pip install meshio lxml pygmsh pyamg jupyter notebook ipython
    apt-get -y update 
    apt-add-repository universe
    add-apt-repository ppa:ngsolve/ngsolve
    apt-get -y update
    apt-get -y install ngsolve
    ldconfig

%runscript
    exec /bin/bash -i