-
Notifications
You must be signed in to change notification settings - Fork 0
/
install.jl
65 lines (56 loc) · 807 Bytes
/
install.jl
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
# Initialize the package directory.
Pkg.init()
# Create REQUIRE file.
write(
Pkg.dir("REQUIRE"),
"""
# BioJulia packages
BioAlignments
BioSequences
BioSymbols
GeneticVariation
GenomicFeatures
# Statistics
DataFrames
Distances
Distributions
GLM
KernelDensity
MultivariateStats
StatsBase
StatsFuns
# Numerical analysis
DiffBase
ForwardDiff
Interpolations
Optim
ReverseDiff
SpecialFunctions
# Compression/decompression tools
CodecBzip2
CodecXz
CodecZlib
CodecZstd
# Common file formats
CSV
EzXML
Feather
JLD2
JSON
YAML
# Misc. useful packages
Combinatorics
DocOpt
Formatting
IJulia
Images
IterTools
""")
# Update METADATA.
Pkg.update()
# Install packages listed in REQUIRE.
Pkg.resolve()
# Precompile installed packages.
for pkgname in keys(Pkg.installed())
eval(:(import $(Symbol(pkgname))))
end