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Updating to current version of freesurfer #69

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butellyn opened this issue Aug 15, 2022 · 4 comments
Closed

Updating to current version of freesurfer #69

butellyn opened this issue Aug 15, 2022 · 4 comments

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@butellyn
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Hi! Is this app being maintained? If so, would it be possible to update it to the current version of freesurfer (7.2.0)?

@PeerHerholz
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Hi @butellyn,

thank you very much for opening this issue.

We actually started the process of supporting FreeSurfer 7 in #67 but didn't finish it. I guess it's time to do so now, wdyt @Shotgunosine?

Cheers, Peer

@noxtoby
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noxtoby commented Sep 4, 2022

This fork over at the E-DADS github works for 7.1.1. Should be straightforward to replace line 79 of Dockerfile_fs7 with your desired version.

And if you're happy with 7.1.1, see here for using the prebuilt docker at noxtoby/edads:freesurfer7p1p1 and how to use docker2singularity for HPC cluster usage.

@PeerHerholz
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Thx so much for the pointer @noxtoby, that's definitely helpful.

@Remi-Gau
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completed in #67

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