- Installation & Getting Started
Instructions for the installation of the module and some examples to get you started.
Installation <installation>
API documentation <cli>- Manual
This section contains manuals for specific commands.
Creating ISA-tab files <man_isa_tpl>
Annotating ISA-tab files <man_isa_tab>
Upload raw data to SODAR <man_ingest_fastq>
Upload raw data to SODAR <man_seasnap_itransfer_results>
Create a sample info file for Sea-snap <man_write_sample_info>- Use cases
Use cases for common processing tasks.
Exome sequencing <usecase_exomes>
Clinical single cell pipeline <usecase_single_cell>- Project Info
More information on the project, including the changelog, list of contributing authors, and contribution instructions.
Authors <authors>
History <history>
License <license>
installation cli_docs
man_isa_tpl man_isa_tab man_ingest_fastq man_itransfer_results man_write_sample_info
usecase_exomes usecase_single_cell
authors history license