Prerequisites when using conda:
$ conda create -n cubi-tk python=3.7
$ conda activate cubi-tk
Clone CUBI-SAK and install:
$ git clone git@cubi-gitlab.bihealth.org:CUBI/Pipelines/cubi-tk.git
$ cd cubi-tk
$ pip install -e .
For building the manual or running tests you will need some more packages.
$ pip install -r requirements/develop.txt
$ make test
$ cd docs_manual
$ make clean html