Adding link-out to Missense3D-DB.

Fixes #83
varfish-org · Apr 1, 2021 · 4e99226 · 4e99226
1 parent 8d3f1e7
commit 4e99226
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diff --git a/variants/queries.py b/variants/queries.py
@@ -224,6 +224,7 @@ def __init__(self, *args, **kwargs):
                     func.max(Hgnc.sa.pubmed_id).label("pubmed_id"),
                     func.max(Hgnc.sa.ucsc_id_novers).label("ucsc_id_novers"),
                     func.max(Hgnc.sa.hgnc_id).label("hgnc_id"),
+                    func.max(Hgnc.sa.uniprot_ids).label("uniprot_ids"),
                 ]
             )
             .select_from(Hgnc.sa)
@@ -244,6 +245,7 @@ def extend_fields(self, _query_parts):
             func.coalesce(self.subquery_hgnc.c.gene_family, "").label("gene_family"),
             func.coalesce(self.subquery_hgnc.c.pubmed_id, "").label("pubmed_id"),
             func.coalesce(self.subquery_hgnc.c.hgnc_id, "").label("hgnc_id"),
+            func.coalesce(self.subquery_hgnc.c.uniprot_ids, "").label("uniprot_ids"),
         ]
 
 

diff --git a/variants/templates/variants/filter_result/row.html b/variants/templates/variants/filter_result/row.html
@@ -331,6 +331,15 @@
             Gene @GenCC
           </span>
           {% endif %}
+          {% if entry.uniprot_ids %}
+          <a class="dropdown-item" href="http://missense3d.bc.ic.ac.uk:8080/search_direct?uniprot={{ entry.uniprot_ids }}" target="_blank">
+            Gene @Missense3D-DB
+          </a>
+          {% else %}
+          <span class="dropdown-item disabled">
+            Gene @Missense3D-DB
+          </span>
+          {% endif %}
           {% if hpoterms %}
             <a class="dropdown-item" href="https://www.ncbi.nlm.nih.gov/pubmed/?term={{ entry|get_pubmed_linkout:hpoterms }}" target="_blank">
               Gene+Phenotypes @PubMed