Fixing CADD annotation (#313)

varfish-org · Feb 1, 2022 · 640204d · 640204d
1 parent 4bf8445
commit 640204d
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diff --git a/HISTORY.rst b/HISTORY.rst
@@ -41,6 +41,7 @@ End-User Summary
 - Fixing issue with multiple added variants (#283)
 - Implementing several usability improvements for clinvar submission editor (#286)
 - Make clinvar UI work with many annotations (#302)
+- Fixing CADD annotation (#319)
 
 Full Change List
 ================
@@ -82,9 +83,10 @@ Full Change List
 - Adding shortcut buttons to phenotype annotation (#289)
 - Fixing issue with multiple added variants (#283)
 - Make clinvar UI work with many annotations by making it load them lazily for one case at a time (#302)
-- Implementing several usability improvements for clinvar submission editor (#286).
+- Implementing several usability improvements for clinvar submission editor (#286)
 - Adding CI builds for Python 3.10 in Github actions, bumping numpy/pandas dependencies.
   Dropping support for Python 3.7.
+- Fixing CADD annotation (#319)
 
 -------
 v0.23.9

diff --git a/variants/models.py b/variants/models.py
@@ -2753,13 +2753,12 @@ def score(self):
         uncached = uncached[: settings.VARFISH_CADD_MAX_VARS]
 
         # TODO: properly test
-        cadd_release = "%s-%s" % (self.genomebuild, settings.VARFISH_CADD_REST_API_CADD_VERSION)
         try:
             res = requests.post(
                 settings.VARFISH_CADD_REST_API_URL + "/annotate/",
                 json={
                     "genome_build": self.genomebuild,
-                    "cadd_release": cadd_release,
+                    "cadd_release": settings.VARFISH_CADD_REST_API_CADD_VERSION,
                     "variant": ["-".join(map(str, var)) for var in uncached],
                 },
             )