Move varfish export Vue app (#711)

Closes: #711
Related-Issue: #711
Projected-Results-Impact: none

.github/workflows/ci.yml

@@ -69,8 +69,8 @@ jobs:
           pip freeze
       - name: Build and run Vue app
         run: |
-          npm ci --prefix varfish/vueapp
-          nohup npm run -prefix varfish/vueapp serve &
+          npm ci --prefix clinvar_export/vueapp
+          nohup npm run -prefix clinvar_export/vueapp serve &
       - name: download icons
         run: python manage.py geticons
       - name: run collectstatic

.gitignore

@@ -360,4 +360,4 @@ celerybeat-schedule
 
 staticfiles.bak/
 
-varfish/vueapp/webpack-stats.json
+webpack-stats.json

HISTORY.rst

@@ -128,6 +128,7 @@ Full Change List
 - Initial vue.js implementation for small variant filtration (#563).
 - Changing ClinVar link-out to VCV entry instead of coordinates (#693).
 - Adding unit test for clinvar Vue app (#692).
+- Moving clinvar Vue app (#711).
 
 ------
 v1.2.0

Makefile

@@ -7,15 +7,15 @@ black:
 
 .PHONY: npm-install
 npm-install:
-	cd varfish/vueapp && npm ci
+	cd clinvar_export/vueapp && npm ci
 
 .PHONY: serve
 serve:
 	$(MANAGE) runserver
 
 .PHONY: serve_vue
 serve_vue:
-	npm run --prefix varfish/vueapp serve
+	npm run --prefix clinvar_export/vueapp serve
 
 .PHONY: serve_public
 serve_public:
@@ -66,11 +66,11 @@ test-noselenium:
 
 .PHONY: test_clinvar_export_vue
 test_clinvar_export_vue:
-	npm run --prefix varfish/vueapp test:unit $(arg)
+	npm run --prefix clinvar_export/vueapp test:unit $(arg)
 
 .PHONY: lint_clinvar_export_vue
 lint_clinvar_export_vue:
-	npm run --prefix varfish/vueapp lint $(arg)
+	npm run --prefix clinvar_export/vueapp lint $(arg)
 
 .PHONY: lint
 lint: flake8

config/settings/base.py

@@ -941,7 +941,7 @@ def set_logging(debug):
 # ------------------------------------------------------------------------------
 WEBPACK_LOADER = {
     "VARFISH_VUE": {
-        "STATS_FILE": ROOT_DIR("varfish/vueapp/webpack-stats.json"),
+        "STATS_FILE": ROOT_DIR("clinvar_export/vueapp/webpack-stats.json"),
     }
 }
 

config/settings/production.py

@@ -83,7 +83,7 @@
 STATICFILES_STORAGE = "whitenoise.storage.CompressedManifestStaticFilesStorage"
 
 # Add Samplesheets vue.js app assets
-STATICFILES_DIRS.append(str(ROOT_DIR("varfish/vueapp/dist")))
+STATICFILES_DIRS.append(str(ROOT_DIR("clinvar_export/vueapp/dist")))
 
 # Add optonal custom directory for static includes at deployment stage
 STATICFILES_DIRS += env.list("CUSTOM_STATIC_DIR", default=[])
@@ -147,4 +147,4 @@
 
 # WEBPACK / VUE.JS CONFIGURATION
 # ------------------------------------------------------------------------------
-STATICFILES_DIRS.append(str(ROOT_DIR("varfish/vueapp/dist")))
+STATICFILES_DIRS.append(str(ROOT_DIR("clinvar_export/vueapp/dist")))

docker/Dockerfile

@@ -66,7 +66,7 @@ RUN curl -sL https://deb.nodesource.com/setup_14.x | bash - && \
     apt install nodejs
 
 # Install npm dependencies.
-RUN cd /usr/src/app/varfish/vueapp && \
+RUN cd /usr/src/app/clinvar_export/vueapp && \
     npm ci && \
     npm run build
 
@@ -117,7 +117,7 @@ RUN cd /usr/src/app && \
 
 # Prepare static files
 RUN cd /usr/src/app && \
-    mkdir -p /usr/src/app/varfish/vueapp/dist && \
+    mkdir -p /usr/src/app/clinvar_export/vueapp/dist && \
     DJANGO_SECRET_KEY=for-build-only \
     DJANGO_SETTINGS_MODULE=config.settings.production \
     DATABASE_URL=postgres://varfish:varfish@fake/varfish \

docs_manual/developer_installation.rst

@@ -111,11 +111,11 @@ Use the tool provided in ``utility/`` to set up vue.js.
     $ sudo bash utility/install_vue_dev.sh
 
 Open an additional terminal and switch into the vue directory. Then install
-the VarFish vue app.
+the Clinvar Exprot vue app.
 
 .. code-block:: bash
 
-    $ cd varfish/vueapp
+    $ cd clinvar_export/vueapp
     $ npm install
 
 When finished, keep this terminal open to run the vue app.