Merge 9c9438a into ce2f839

HISTORY.rst

@@ -2,9 +2,9 @@
 History / Changelog
 ===================
 
------------------
-HEAD (unreleased)
------------------
+-------
+v0.32.1
+-------
 
 End-User Summary
 ================

docker/Dockerfile

@@ -31,6 +31,18 @@ RUN cd /usr/src/app && \
     pip install --no-cache-dir -r requirements/production.txt && \
     pip install --no-cache-dir -r requirements/local.txt
 
+# Install miniconda3 and setup environment for annotation, required for Kiosk.
+RUN ["/bin/bash","-c", "cd /tmp && \
+        wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh && \
+        bash Miniconda3-latest-Linux-x86_64.sh -b -p /opt/miniconda3 && \
+        source /opt/miniconda3/bin/activate && \
+        conda install -c conda-forge -y mamba && \
+        mamba create -c bioconda -y -n varfish-annotator \
+            varfish-annotator-cli=0.10=0 \
+            htslib=1.9 \
+            bcftools=1.9 && \
+        rm -f Miniconda3-latest-Linux-x86_64.sh"]
+
 # Install modern nodejs
 RUN curl -sL https://deb.nodesource.com/setup_12.x | bash - && \
     apt install nodejs

docs_manual/admin_upgrade.rst

@@ -6,6 +6,15 @@ Upgrade Varfish Installation
 
 This section contains upgrade instructions for upgrading your VarFish Server installation using `VarFish Docker Compose <https://github.com/bihealth/varfish-docker-compose>`__.
 
+------------------
+v0.23.0 to v0.23.1
+------------------
+
+**Summary**
+
+This is a minor bug fix release that improved the deployment of the VarFish Demo and Kiosk sites.
+You should be able to upgrade by just updating your ``varfish-docker-compose`` repository clone and calling ``docker-compose up -d``.
+
 ------------------
 v0.22.1 to v0.23.0
 ------------------

variants/templates/variants/kiosk_home.html

@@ -38,6 +38,7 @@ <h5 class="card-header" id="important-information">
             However, your data will be temporarily stored on our server.
             Only upload data if you have sufficient consent to do so.
             We do not inspect, make available or use uploaded data except for debugging the VarFish software.
+            We monitor the server and website usage for operations and development purposes.
             All uploads will be deleted automatically after 2 months.
           </dd>