Fixing problem with ACMD classifiction (#359)

Closes: #359
varfish-org · Mar 4, 2022 · b9b02a6 · b9b02a6
1 parent fbfc86c
commit b9b02a6
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diff --git a/HISTORY.rst b/HISTORY.rst
@@ -45,6 +45,7 @@ End-User Summary
 - Adding mitochondrial inheritance to case phenotype annotation (#325)
 - Fix issue with variant annotation export (#328)
 - Allowing direct update of variant annotations and ACMG ratings on case annotations details (#344)
+- Fixing problem with ACMD classifiction where VUS-3 was given but should be LB-2 (#359)
 
 Full Change List
 ================
@@ -99,6 +100,7 @@ Full Change List
 - Adding deep linking into case details tab (#344)
 - Allowing direct update of variant annotations and ACMG ratings on case annotations details (#344)
 - Removing `display_hgmd_public_membership` (#363)
+- Fixing problem with ACMD classifiction where VUS-3 was given but should be LB-2 (#359)
 
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 v0.23.9

diff --git a/varfish/static/js/flags_comments.js b/varfish/static/js/flags_comments.js
@@ -475,7 +475,7 @@ function updateAcmgRating(theForm) {
     (pm == 2 && pp >= 2) ||
     (pm == 1 && pp >= 4)
   )
-  const isLikelyBenign = ((bs >= 2) && (bp >= 1) || ((bs >= 1) && (bp >= 2)));
+  const isLikelyBenign = (((bs >= 1) && (bp >= 1)) || (bp >= 2));
   const isBenign = (bas > 0) || (bs >= 2);
 
   const isConflicting = (isPathogenic || isLikelyPathogenic) && (isBenign || isLikelyBenign);