Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Create basic Dockerfile #19

Closed
bbimber opened this issue Jul 21, 2021 · 1 comment
Closed

Create basic Dockerfile #19

bbimber opened this issue Jul 21, 2021 · 1 comment

Comments

@bbimber
Copy link
Contributor

bbimber commented Jul 21, 2021

We should make a basic Dockerfile for nimble, which installs nimble and downloads the latest nimble-align. It should probably use ENTRY_POINT to point to nimble.

This workflow should virtually work as-is to make and publish a nightly docker image.

https://github.com/BimberLab/DISCVRSeq/blob/master/.github/workflows/docker.yml

Having both of these will be useful for running on exacloud.

One thing to consider: since nimble can make large temp files, the location used for those temp files should be configurable, perhaps as an argument or maybe environment variable. For docker usage, we probably do not want those written inside the container.

@hextraza
Copy link
Collaborator

hextraza commented Sep 1, 2021

Closed #21

@hextraza hextraza closed this as completed Sep 1, 2021
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

2 participants