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Collapsing LOD interval and labels #13
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Troubleshooting linkagemapview overlapping qtl intervalsFound a "brute force" work around to this problem and wanted to share Follow the script below to reproduce the problem and demonstrate a solution #install packages #create a dataframe to test #create a qtldf #it seems to only occur when the intervals begin and end close to one another #set directory #outfile #this is the function that produces the figure when you add a "showonly" locus to the problem area, it will force the labels out to the right #append a new fake locus onto the dataframe #produce a new figure you can see that it pops the overlapping lables out to the right format_list <- list() label_adjuster <- c("w") #produce a new figure lmv.linkage.plot(mapthis = linkage_dat1, |
The QTL intervals and labels from my "qtldf" are collapsing on one another making them illegible (see attached). Do you have any work arounds?
troubleshooting.pdf
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