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GitHub projects

Relevant projects hosted on GitHub are shown below.

biotoolsRegistry

https://github.com/bio-tools/biotoolsregistry

The main bio.tools repo.

biotoolsDocs

https://github.com/bio-tools/biotoolsDocs

Online docs for bio.tools (these docs!)

biotoolsSchema

https://github.com/bio-tools/biotoolsschema

Resource description model used by bio.tools.

biotoolsSchemaDocs

https://github.com/bio-tools/biotoolsSchemaDocs

Online docs for biotoolsSchema.

biotoolsShim

https://github.com/bio-tools/biotoolsShim

Adapters for converting biotoolsSchema-compatible file formats.

biotoolsConnect

https://github.com/bio-tools/biotoolsConnect/

Adaptors for content exchange with community projects (SeqWIKI, BioConductor, BioJS, ExPASy, ms-utils.org).

ReGaTE

https://github.com/C3BI-pasteur-fr/ReGaTE

Content import from Galaxy instances.

ReMoTE

https://github.com/c3bi-pasteur-fr/ReMoTE

Content import from Mobyle instances.

OpenAPI-Importer

https://github.com/bio-tools/OpenAPI-Importer

Tool to convert Swagger configuration files to Bio.Tools input XML.

ToolDog

https://github.com/bio-tools/tooldog

Generate XML template for Galaxy or CWL from the description of tools from the registry.

biotoolsCompose

https://github.com/bio-tools/biotoolsCompose

Semi-automated workflow design using EDAM-annotated tools.

EDAM

https://github.com/edamontology/edamontology

Controlled vocabulary used by bio.tools.

edamMap

https://github.com/edamontology/edammap

Mapping terms and text to EDAM concepts.

Studentships

https://github.com/bio-tools/Studentships

Proposals for the bio.tools studentship scheme.