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DESCRIPTION
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DESCRIPTION
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Package: MEDIPS
Type: Package
Title: DNA IP-seq data analysis
Version: 1.57.0
Date: 2020-02-15
Author: Lukas Chavez, Matthias Lienhard, Joern Dietrich, Isaac Lopez Moyado
Maintainer: Lukas Chavez <lukaschavez@ucsd.edu>
Description: MEDIPS was developed for analyzing data derived from
methylated DNA immunoprecipitation (MeDIP) experiments followed
by sequencing (MeDIP-seq). However, MEDIPS provides functionalities for the analysis of any kind of quantitative
sequencing data (e.g. ChIP-seq, MBD-seq, CMS-seq and others)
including calculation of differential coverage between groups
of samples and saturation and correlation analysis.
License: GPL (>=2)
LazyLoad: yes
Depends: R (>= 3.0), BSgenome, Rsamtools
Imports: GenomicRanges, Biostrings, graphics, gtools, IRanges, methods,
stats, utils, edgeR, DNAcopy, biomaRt, rtracklayer,
preprocessCore
Suggests: BSgenome.Hsapiens.UCSC.hg19, MEDIPSData, BiocStyle
biocViews: DNAMethylation, CpGIsland, DifferentialExpression,
Sequencing, ChIPSeq, Preprocessing, QualityControl,
Visualization, Microarray, Genetics, Coverage,
GenomeAnnotation, CopyNumberVariation, SequenceMatching
NeedsCompilation: no
Packaged: 2016-11-30 11:57:23 UTC; chavez