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RegEnrich 1.13.4

  • Fix a bug in GRN.R
  • Fix a bug in DEA_LRT_DESeq2
  • Move BiocStyle to Imports

RegEnrich 1.13.1

  • Fix the bug of re-building the vignette on Windows.

RegEnrich 1.3.1

RegEnrich 1.1.0

  • Bump the version number according to the Bioconductor.

RegEnrich 1.0.1

  • Fix the bug: object 'print.tbl' not found.

RegEnrich 1.0.0

  • Bump the version number because of the release of Bioconductor.

RegEnrich 0.99.19

  • Fix bugs in .regSEA function.

RegEnrich 0.99.18

  • Update R version dependency to 4.0.0.

RegEnrich 0.99.17

  • Fix bugs of regenrich_diffExpr function.
  • Add an example for %>%.
  • Use Authors@R [cre] designation.

RegEnrich 0.99.16

  • Import magrittr

RegEnrich 0.99.15

  • Fix a bug in regenrich_rankScore function.
  • Reexport pipe %>%.

RegEnrich 0.99.14

  • Add \donttest tags.
  • Optimize COEN function.
  • Replace bplapply by lapply in pickSoftThreshold2 function.

RegEnrich 0.99.13

  • Fix bugs of plotSoftPower on Windows.
  • Hide documentations of COEN and GRN functions.
  • Remove doParallel package from imports.

RegEnrich 0.99.12

  • Remove .Rpoj file.

RegEnrich 0.99.11

  • Remove \dontrun tags from all examples.
  • Remove lazyData: true from DESCRIPTION.
  • Formatting vignettes using BiocStyle.
  • Replace NEWS file by NEWS.md file to track changes to the package.
  • Some packages in Imports are moved to Depends in DESCRIPTION file.
  • DeaSet class inherits SummarizedExperiment class.
  • RegenrichSet class inherits DeaSet class.
  • TopNetwork class inherits BiocSet class.
  • topResult and allResult slots of Enrich object are tibble rather than data frame.
  • Score class inherits tibble.
  • The show methods for DeaSet, TopNetwork, Enrich, Score, and RegenrichSet object have been optimized.

RegEnrich 0.99.1

  • Submission to Bioconductor.