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NAMESPACE
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NAMESPACE
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# Generated by roxygen2: do not edit by hand
export("cellData<-")
export("cellnames<-")
export("pathData<-")
export("pathStat<-")
export("pathStatNames<-")
export("pathStats<-")
export("pathnames<-")
export(PseudotimeOrdering)
export(averagePseudotime)
export(cellData)
export(cellnames)
export(createClusterMST)
export(defineMSTPaths)
export(guessMSTRoots)
export(ncells)
export(npaths)
export(pathData)
export(pathStat)
export(pathStatNames)
export(pathStats)
export(pathnames)
export(rowmean)
export(rowmedian)
export(splitByBranches)
exportClasses(PseudotimeOrdering)
exportMethods("$")
exportMethods("$<-")
exportMethods("cellData<-")
exportMethods("cellnames<-")
exportMethods("pathData<-")
exportMethods("pathStat<-")
exportMethods("pathStatNames<-")
exportMethods("pathStats<-")
exportMethods("pathnames<-")
exportMethods(createClusterMST)
exportMethods(show)
import(S4Vectors)
import(SummarizedExperiment)
import(methods)
importClassesFrom(SingleCellExperiment,SingleCellExperiment)
importClassesFrom(SummarizedExperiment,SummarizedExperiment)
importFrom(Matrix,colMeans)
importFrom(Matrix,crossprod)
importFrom(Matrix,rowMeans)
importFrom(Matrix,rowSums)
importFrom(Matrix,t)
importFrom(S4Vectors,head)
importFrom(SingleCellExperiment,colLabels)
importFrom(SingleCellExperiment,reducedDim)
importFrom(SummarizedExperiment,assay)
importFrom(igraph,"E<-")
importFrom(igraph,"V<-")
importFrom(igraph,E)
importFrom(igraph,V)
importFrom(igraph,decompose)
importFrom(igraph,degree)
importFrom(igraph,delete.edges)
importFrom(igraph,delete_vertices)
importFrom(igraph,distances)
importFrom(igraph,ends)
importFrom(igraph,get.edge.ids)
importFrom(igraph,graph.adjacency)
importFrom(igraph,graph_from_adjacency_matrix)
importFrom(igraph,minimum.spanning.tree)
importFrom(igraph,shortest_paths)
importFrom(igraph,subcomponent)
importFrom(stats,dist)
importFrom(stats,median)