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DESCRIPTION
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DESCRIPTION
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Package: gmoviz
Type: Package
Title: Seamless visualization of complex genomic variations in GMOs and
edited cell lines
Version: 1.17.0
Authors@R: c(
person("Kathleen", "Zeglinski", email = "kathleen.zeglinski@csl.com.au",
role = c("cre", "aut")),
person("Arthur", "Hsu", email = "arthur.hsu@csl.com.au", role = "aut"),
person("Monther", "Alhamdoosh", email = "monther.alhamdoosh@csl.com.au",
role = "aut", comment = c(ORCID = "0000-0002-2411-1325")),
person("Constantinos", "Koutsakis",
email = "Constantinos.Koutsakis@csl.com.au", role = "aut"))
Description: Genetically modified organisms (GMOs) and cell lines are widely
used models in all kinds of biological research. As part of characterising
these models, DNA sequencing technology and bioinformatics analyses are
used systematically to study their genomes. Therefore, large volumes of
data are generated and various algorithms are applied to analyse this data,
which introduces a challenge on representing all findings in an informative
and concise manner. `gmoviz` provides users with an easy way to visualise
and facilitate the explanation of complex genomic editing events on a
larger, biologically-relevant scale.
biocViews:
Visualization,
Sequencing,
GeneticVariability,
GenomicVariation,
Coverage
Depends:
circlize,
GenomicRanges,
graphics,
R (>= 4.0)
Imports:
grid,
gridBase,
Rsamtools,
ComplexHeatmap,
BiocGenerics,
Biostrings,
GenomeInfoDb,
methods,
GenomicAlignments,
GenomicFeatures,
IRanges,
rtracklayer,
pracma,
colorspace,
S4Vectors
License: GPL-3
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.0.2
Suggests:
testthat,
knitr,
rmarkdown,
pasillaBamSubset,
BiocStyle,
BiocManager
VignetteBuilder: knitr