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meta.yaml
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meta.yaml
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{% set name = "abyss" %}
{% set version = "2.0.2" %}
package:
name: {{ name|lower }}-k128
version: {{ version }}
build:
skip: True # [osx]
number: 2
string: boost{{CONDA_BOOST}}_{{PKG_BUILDNUM}}
source:
fn: {{ name|lower }}-{{ version }}.tar.gz
url: http://www.bcgsc.ca/platform/bioinfo/software/{{ name|lower }}/releases/{{ version }}/{{ name|lower }}-{{ version }}.tar.gz
sha256: d87b76edeac3a6fb48f24a1d63f243d8278a324c9a5eb29027b640f7089422df
requirements:
build:
- gcc # [not osx]
- llvm # [osx]
- boost {{CONDA_BOOST}}*
- google-sparsehash
- sqlite
- openmpi
run:
- libgcc # [not osx]
- boost {{CONDA_BOOST}}*
- bwa
- pandoc
- sqlite
- openmpi
- make
test:
commands:
- ABYSS-P --version
- ABYSS --version
- abyss-pe help
about:
home: http://www.bcgsc.ca/platform/bioinfo/software/abyss
license: GPL3
license_file: LICENSE
summary: Assembly By Short Sequences - a de novo, parallel, paired-end sequence assembler
extra:
container:
# openmpi needs ssh/rsh
extended-base: true