/
meta.yaml
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/
meta.yaml
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{% set version = "1.24.0" %}
{% set name = "openPrimeR" %}
{% set bioc = "3.18" %}
package:
name: 'bioconductor-{{ name|lower }}'
version: '{{ version }}'
source:
url:
- 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
- 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
- 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
- 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
md5: e3fe2285d832b192c7054a36e2aedc6b
build:
number: 0
rpaths:
- lib/R/lib/
- lib/
run_exports: '{{ pin_subpackage("bioconductor-openprimer", max_pin="x.x") }}'
noarch: generic
# Suggests: testthat (>= 1.0.2), knitr (>= 1.13), rmarkdown (>= 1.0), devtools (>= 1.12.0), doParallel (>= 1.0.10), pander (>= 0.6.0), learnr (>= 0.9)
# SystemRequirements: MAFFT (>= 7.305), OligoArrayAux (>= 3.8), ViennaRNA (>= 2.4.1), MELTING (>= 5.1.1), Pandoc (>= 1.12.3)
requirements:
host:
- 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
- 'bioconductor-biostrings >=2.70.0,<2.71.0'
- 'bioconductor-decipher >=2.30.0,<2.31.0'
- 'bioconductor-genomicranges >=1.54.0,<1.55.0'
- 'bioconductor-iranges >=2.36.0,<2.37.0'
- 'bioconductor-s4vectors >=0.40.0,<0.41.0'
- 'r-ape >=3.5'
- r-base
- 'r-digest >=0.6.9'
- 'r-distr >=2.6'
- 'r-distrex >=2.6'
- 'r-dplyr >=0.5.0'
- 'r-fitdistrplus >=1.0-7'
- 'r-foreach >=1.4.3'
- 'r-ggplot2 >=2.1.0'
- 'r-hmisc >=3.17-4'
- 'r-lpsolveapi >=5.5.2.0-17'
- 'r-magrittr >=1.5'
- 'r-openxlsx >=4.0.17'
- 'r-plyr >=1.8.4'
- 'r-rcolorbrewer >=1.1-2'
- 'r-reshape2 >=1.4.1'
- 'r-scales >=0.4.0'
- 'r-seqinr >=3.3-3'
- 'r-stringdist >=0.9.4.1'
- 'r-stringr >=1.0.0'
- 'r-uniqtag >=1.0'
- 'r-xml >=3.98-1.4'
- 'mafft >=7.305'
run:
- 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
- 'bioconductor-biostrings >=2.70.0,<2.71.0'
- 'bioconductor-decipher >=2.30.0,<2.31.0'
- 'bioconductor-genomicranges >=1.54.0,<1.55.0'
- 'bioconductor-iranges >=2.36.0,<2.37.0'
- 'bioconductor-s4vectors >=0.40.0,<0.41.0'
- 'r-ape >=3.5'
- r-base
- 'r-digest >=0.6.9'
- 'r-distr >=2.6'
- 'r-distrex >=2.6'
- 'r-dplyr >=0.5.0'
- 'r-fitdistrplus >=1.0-7'
- 'r-foreach >=1.4.3'
- 'r-ggplot2 >=2.1.0'
- 'r-hmisc >=3.17-4'
- 'r-lpsolveapi >=5.5.2.0-17'
- 'r-magrittr >=1.5'
- 'r-openxlsx >=4.0.17'
- 'r-plyr >=1.8.4'
- 'r-rcolorbrewer >=1.1-2'
- 'r-reshape2 >=1.4.1'
- 'r-scales >=0.4.0'
- 'r-seqinr >=3.3-3'
- 'r-stringdist >=0.9.4.1'
- 'r-stringr >=1.0.0'
- 'r-uniqtag >=1.0'
- 'r-xml >=3.98-1.4'
- 'mafft >=7.305'
test:
commands:
- '$R -e "library(''{{ name }}'')"'
about:
home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
license: GPL-2
summary: 'Multiplex PCR Primer Design and Analysis'
description: 'An implementation of methods for designing, evaluating, and comparing primer sets for multiplex PCR. Primers are designed by solving a set cover problem such that the number of covered template sequences is maximized with the smallest possible set of primers. To guarantee that high-quality primers are generated, only primers fulfilling constraints on their physicochemical properties are selected. A Shiny app providing a user interface for the functionalities of this package is provided by the ''openPrimeRui'' package.'
license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-2'