meta.yaml

{% set name = 'chewBBACA' %}
{% set version = '3.3.5' %}

package:
  name: {{ name|lower }}
  version: {{ version }}

source:
  url: https://github.com/B-UMMI/{{ name }}/archive/refs/tags/v{{ version }}.tar.gz
  # url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz
  sha256: 6cf063286b55f55e33f75789eb5beaa59a1b7ca454f1a8bd89bb84a67aef1cde
  # sha256: b54c5f4fb2f3c943f9ec51e5b81f4fb9a312fcc87fdea6e0a9f3edbebdf62308

build:
  number: 0
  noarch: python
  entry_points:
    - chewBBACA.py = CHEWBBACA.chewBBACA:main
    - chewie = CHEWBBACA.chewBBACA:main
  script: {{ PYTHON }} -m pip install --no-deps --no-build-isolation . -vvv
  run_exports:
    - {{ pin_subpackage('chewbbaca', max_pin="x") }}

requirements:
  host:
    - python >=3.7
    - pip
  run:
    - python >=3.7
    - numpy >=1.24.3
    - scipy >=1.10.1
    - biopython >=1.79
    - pandas >=1.5.1,<2.1
    - plotly >=5.8.0
    - requests >=2.27.1
    - sparqlwrapper >=2.0.0
    - pyrodigal >=3.0.0
    - blast >=2.9.0
    - mafft >=7.505
    - fasttree >=2.1.11

test:
  imports:
    - CHEWBBACA
    - CHEWBBACA.CreateSchema
    - CHEWBBACA.AlleleCall
    - CHEWBBACA.SchemaEvaluator
    - CHEWBBACA.AlleleCallEvaluator
    - CHEWBBACA.ExtractCgMLST
    - CHEWBBACA.PrepExternalSchema
    - CHEWBBACA.UniprotFinder
    - CHEWBBACA.CHEWBBACA_NS
    - CHEWBBACA.utils
  commands:
    - chewBBACA.py --help
    - chewie --version

about:
  home: https://github.com/B-UMMI/chewBBACA
  license: GPL-3.0-or-later
  license_family: GPL3
  license_file: LICENSE
  summary: 'A complete suite for gene-by-gene schema creation and strain identification.'
  description: 'chewBBACA is a comprehensive pipeline including a set of functions for the creation and validation of whole genome and core genome MultiLocus Sequence Typing (wg/cgMLST) schemas, providing an allele calling algorithm based on Blast Score Ratio that can be run in multiprocessor settings and a set of functions to visualize and validate allele variation in the loci.'
  doc_url: https://chewbbaca.readthedocs.io/en/latest/index.html

extra:
  identifiers:
    - doi:10.1099/mgen.0.000166
  recipe-maintainers:
    - rfm-targa