/
meta.yaml
89 lines (82 loc) · 1.9 KB
/
meta.yaml
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{% set name = "drop" %}
{% set version = "1.3.3" %}
package:
name: "{{ name|lower }}"
version: "{{ version }}"
source:
url: https://github.com/gagneurlab/{{ name }}/archive/{{ version }}.tar.gz
sha256: 846d39e3e6f61e4dcc65c9e205040cb49b43b8a4790189dc225e027a9bf00917
build:
number: 0
noarch: python
entry_points:
- drop=drop.cli:main
script: "{{ PYTHON }} -m pip install . -vv --no-deps --ignore-installed"
requirements:
host:
- python >=3.6
- pip
run:
- python >=3.6
- pandas
- Click >=7.0
- click-log
- python-dateutil
# snakemake/wbuild
- snakemake-minimal >=5.5.2
- wbuild >=1.8
- pandoc
- graphviz
# command line tools
- bc
- wget
- htslib
- samtools >=1.9
- bcftools >=1.9
- gatk4 >=4.0.4
- star >=2.7
# R dependencies
- r-base >=4.0.0
- r-rmarkdown
- r-knitr
- r-ggplot2
- r-ggthemes
- r-cowplot
- r-data.table
- r-dplyr
- r-tidyr
- r-magrittr
- r-devtools
- r-tmae >=1.0.4
# bioconductor packages
- bioconductor-deseq2
- bioconductor-genomicscores
- bioconductor-outrider >=1.6.1
- bioconductor-fraser >=1.10.0
- bioconductor-variantannotation
test:
imports:
- drop
commands:
- "drop --version"
- "gatk --version"
- "samtools --version"
- "bcftools --version"
about:
home: https://github.com/gagneurlab/drop
license: MIT
license_family: OTHER
summary: Detection of RNA Outlier Pipeline
doc_url: https://gagneurlab-drop.readthedocs.io/en/latest/
dev_url: https://github.com/gagneurlab/drop
extra:
container:
# click requires a unicode locale when used with Python 3
# extended-base generates en_US.UTF-8 locale and sets LC_ALL, LANG properly
extended-base: true
identifiers:
- https://doi.org/10.1038/s41596-020-00462-5
recipe-maintainers:
- c-mertes
- nickhsmith
- vyepez88