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sortmerna · Nov 2, 2019 · 18e59e1 · 18e59e1
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diff --git a/tests/data/empty_file.fasta → data/empty_file.fasta b/tests/data/empty_file.fasta → data/empty_file.fasta
diff --git a/tests/data/gg_13_8_ref_set.fasta → data/gg_13_8_ref_set.fasta b/tests/data/gg_13_8_ref_set.fasta → data/gg_13_8_ref_set.fasta
diff --git a/tests/data/illumina_GQ099317.fasta → data/illumina_GQ099317.fasta b/tests/data/illumina_GQ099317.fasta → data/illumina_GQ099317.fasta
diff --git a/rRNA_databases/README.txt → data/rRNA_databases/README.txt b/rRNA_databases/README.txt → data/rRNA_databases/README.txt
diff --git a/rRNA_databases/rfam-5.8s-database-id98.fasta → ...A_databases/rfam-5.8s-database-id98.fasta b/rRNA_databases/rfam-5.8s-database-id98.fasta → ...A_databases/rfam-5.8s-database-id98.fasta
diff --git a/rRNA_databases/rfam-5s-database-id98.fasta → ...RNA_databases/rfam-5s-database-id98.fasta b/rRNA_databases/rfam-5s-database-id98.fasta → ...RNA_databases/rfam-5s-database-id98.fasta
diff --git a/rRNA_databases/scripts/edit_U_to_T_rna.py → ...rRNA_databases/scripts/edit_U_to_T_rna.py b/rRNA_databases/scripts/edit_U_to_T_rna.py → ...rRNA_databases/scripts/edit_U_to_T_rna.py
diff --git a/rRNA_databases/scripts/generate_databases.sh → ...A_databases/scripts/generate_databases.sh b/rRNA_databases/scripts/generate_databases.sh → ...A_databases/scripts/generate_databases.sh
diff --git a/rRNA_databases/scripts/hmmer_clean.sh → data/rRNA_databases/scripts/hmmer_clean.sh b/rRNA_databases/scripts/hmmer_clean.sh → data/rRNA_databases/scripts/hmmer_clean.sh
diff --git a/rRNA_databases/silva-arc-16s-id95.fasta → data/rRNA_databases/silva-arc-16s-id95.fasta b/rRNA_databases/silva-arc-16s-id95.fasta → data/rRNA_databases/silva-arc-16s-id95.fasta
diff --git a/rRNA_databases/silva-arc-23s-id98.fasta → data/rRNA_databases/silva-arc-23s-id98.fasta b/rRNA_databases/silva-arc-23s-id98.fasta → data/rRNA_databases/silva-arc-23s-id98.fasta
diff --git a/rRNA_databases/silva-bac-16s-id90.fasta → data/rRNA_databases/silva-bac-16s-id90.fasta b/rRNA_databases/silva-bac-16s-id90.fasta → data/rRNA_databases/silva-bac-16s-id90.fasta
diff --git a/rRNA_databases/silva-bac-23s-id98.fasta → data/rRNA_databases/silva-bac-23s-id98.fasta b/rRNA_databases/silva-bac-23s-id98.fasta → data/rRNA_databases/silva-bac-23s-id98.fasta
diff --git a/rRNA_databases/silva-euk-18s-id95.fasta → data/rRNA_databases/silva-euk-18s-id95.fasta b/rRNA_databases/silva-euk-18s-id95.fasta → data/rRNA_databases/silva-euk-18s-id95.fasta
diff --git a/rRNA_databases/silva-euk-28s-id98.fasta → data/rRNA_databases/silva-euk-28s-id98.fasta b/rRNA_databases/silva-euk-28s-id98.fasta → data/rRNA_databases/silva-euk-28s-id98.fasta
diff --git a/rRNA_databases/silva_ids_acc_tax.tar.gz → data/rRNA_databases/silva_ids_acc_tax.tar.gz b/rRNA_databases/silva_ids_acc_tax.tar.gz → data/rRNA_databases/silva_ids_acc_tax.tar.gz
diff --git a/tests/data/ref_GQ099317_forward_and_rc.fasta → data/ref_GQ099317_forward_and_rc.fasta b/tests/data/ref_GQ099317_forward_and_rc.fasta → data/ref_GQ099317_forward_and_rc.fasta
diff --git a/tests/data/ref_short_seqs.fasta → data/ref_short_seqs.fasta b/tests/data/ref_short_seqs.fasta → data/ref_short_seqs.fasta
diff --git a/...t2_environmental_study_550_amplicon.fasta → ...t2_environmental_study_550_amplicon.fasta b/...t2_environmental_study_550_amplicon.fasta → ...t2_environmental_study_550_amplicon.fasta
diff --git a/...environmental_study_550_amplicon.fasta.gz → ...environmental_study_550_amplicon.fasta.gz b/...environmental_study_550_amplicon.fasta.gz → ...environmental_study_550_amplicon.fasta.gz
diff --git a/...set4_mate_pairs_metatranscriptomics.fastq → ...set4_mate_pairs_metatranscriptomics.fastq b/...set4_mate_pairs_metatranscriptomics.fastq → ...set4_mate_pairs_metatranscriptomics.fastq
diff --git a/...t4_mate_pairs_metatranscriptomics_1.fastq → ...t4_mate_pairs_metatranscriptomics_1.fastq b/...t4_mate_pairs_metatranscriptomics_1.fastq → ...t4_mate_pairs_metatranscriptomics_1.fastq
diff --git a/...t4_mate_pairs_metatranscriptomics_2.fastq → ...t4_mate_pairs_metatranscriptomics_2.fastq b/...t4_mate_pairs_metatranscriptomics_2.fastq → ...t4_mate_pairs_metatranscriptomics_2.fastq
diff --git a/...t5_simulated_amplicon_silva_bac_16s.fasta → ...t5_simulated_amplicon_silva_bac_16s.fasta b/...t5_simulated_amplicon_silva_bac_16s.fasta → ...t5_simulated_amplicon_silva_bac_16s.fasta
diff --git a/...ata/set7_arc_bac_16S_database_match.fasta → data/set7_arc_bac_16S_database_match.fasta b/...ata/set7_arc_bac_16S_database_match.fasta → data/set7_arc_bac_16S_database_match.fasta
diff --git a/tests/data/silva-arc-16s-database-id95.fasta → data/silva-arc-16s-database-id95.fasta b/tests/data/silva-arc-16s-database-id95.fasta → data/silva-arc-16s-database-id95.fasta
diff --git a/tests/data/silva-bac-16s-database-id85.fasta → data/silva-bac-16s-database-id85.fasta b/tests/data/silva-bac-16s-database-id85.fasta → data/silva-bac-16s-database-id85.fasta