generated from linkml/linkml-template
/
all.jsonld
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all.jsonld
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{
"name": "ontology_associations",
"description": "Various association data models",
"id": "https://w3id.org/ontology_association/all",
"imports": [
"hpoa",
"complexpheno",
"gaf",
"gpi",
"mitab",
"pombase",
"association",
"linkml:types"
],
"license": "https://creativecommons.org/publicdomain/zero/1.0/",
"prefixes": [
{
"prefix_prefix": "linkml",
"prefix_reference": "https://w3id.org/linkml/"
},
{
"prefix_prefix": "ontology_association",
"prefix_reference": "https://w3id.org/ontology_association/"
}
],
"default_prefix": "ontology_association",
"default_range": "string",
"types": [
{
"name": "identifier_type",
"definition_uri": "https://w3id.org/ontology_association/IdentifierType",
"from_schema": "https://w3id.org/biodatamodels/ontology_association/complexpheno",
"typeof": "string",
"base": "str",
"uri": "http://www.w3.org/2001/XMLSchema#string",
"@type": "TypeDefinition"
},
{
"name": "MONDO_identifier",
"definition_uri": "https://w3id.org/ontology_association/MONDOIdentifier",
"from_schema": "https://w3id.org/biodatamodels/ontology_association/complexpheno",
"typeof": "identifier_type",
"base": "str",
"uri": "http://www.w3.org/2001/XMLSchema#string",
"@type": "TypeDefinition"
},
{
"name": "phenotype_identifier",
"definition_uri": "https://w3id.org/ontology_association/PhenotypeIdentifier",
"from_schema": "https://w3id.org/biodatamodels/ontology_association/complexpheno",
"typeof": "identifier_type",
"base": "str",
"uri": "http://www.w3.org/2001/XMLSchema#string",
"@type": "TypeDefinition"
},
{
"name": "PMID_identifier",
"definition_uri": "https://w3id.org/ontology_association/PMIDIdentifier",
"from_schema": "https://w3id.org/biodatamodels/ontology_association/complexpheno",
"typeof": "identifier_type",
"base": "str",
"uri": "http://www.w3.org/2001/XMLSchema#string",
"pattern": "^PMID:\\d+$",
"@type": "TypeDefinition"
},
{
"name": "HPO_phenotype_identifier",
"definition_uri": "https://w3id.org/ontology_association/HPOPhenotypeIdentifier",
"from_schema": "https://w3id.org/biodatamodels/ontology_association/complexpheno",
"typeof": "phenotype_identifier",
"base": "str",
"uri": "http://www.w3.org/2001/XMLSchema#string",
"pattern": "^HP:\\d{7}$",
"@type": "TypeDefinition"
},
{
"name": "NCIT_identifier",
"definition_uri": "https://w3id.org/ontology_association/NCITIdentifier",
"from_schema": "https://w3id.org/biodatamodels/ontology_association/complexpheno",
"typeof": "identifier_type",
"base": "str",
"uri": "http://www.w3.org/2001/XMLSchema#string",
"pattern": "^NCIT:\\d{7}$",
"@type": "TypeDefinition"
},
{
"name": "ECTO_identifier",
"definition_uri": "https://w3id.org/ontology_association/ECTOIdentifier",
"from_schema": "https://w3id.org/biodatamodels/ontology_association/complexpheno",
"typeof": "identifier_type",
"base": "str",
"uri": "http://www.w3.org/2001/XMLSchema#string",
"pattern": "^ECTO:\\d{7}$",
"@type": "TypeDefinition"
},
{
"name": "identifier",
"definition_uri": "https://w3id.org/mitabIdentifier",
"from_schema": "https://w3id.org/mitab",
"typeof": "string",
"base": "str",
"uri": "http://www.w3.org/2001/XMLSchema#string",
"@type": "TypeDefinition"
},
{
"name": "psi_mi_identifier",
"definition_uri": "https://w3id.org/mitabPsi-miIdentifier",
"from_schema": "https://w3id.org/mitab",
"typeof": "string",
"base": "str",
"uri": "http://www.w3.org/2001/XMLSchema#string",
"@type": "TypeDefinition"
},
{
"name": "taxid_identifier",
"definition_uri": "https://w3id.org/mitabTaxidIdentifier",
"from_schema": "https://w3id.org/mitab",
"typeof": "string",
"base": "str",
"uri": "http://www.w3.org/2001/XMLSchema#string",
"@type": "TypeDefinition"
},
{
"name": "intact_miscore_identifier",
"definition_uri": "https://w3id.org/mitabIntact-miscoreIdentifier",
"from_schema": "https://w3id.org/mitab",
"typeof": "string",
"base": "str",
"uri": "http://www.w3.org/2001/XMLSchema#string",
"@type": "TypeDefinition"
},
{
"name": "rogid_identifier",
"definition_uri": "https://w3id.org/mitabRogidIdentifier",
"from_schema": "https://w3id.org/mitab",
"typeof": "string",
"base": "str",
"uri": "http://www.w3.org/2001/XMLSchema#string",
"@type": "TypeDefinition"
},
{
"name": "FYPO_identifier",
"definition_uri": "https://w3id.org/ontology_association/FYPOIdentifier",
"from_schema": "https://w3id.org/ontology_association/pombase",
"typeof": "string",
"base": "str",
"uri": "http://www.w3.org/2001/XMLSchema#string",
"@type": "TypeDefinition"
},
{
"name": "PECO_identifier",
"definition_uri": "https://w3id.org/ontology_association/PECOIdentifier",
"from_schema": "https://w3id.org/ontology_association/pombase",
"typeof": "string",
"base": "str",
"uri": "http://www.w3.org/2001/XMLSchema#string",
"@type": "TypeDefinition"
},
{
"name": "FYPO_EXT_identifier",
"definition_uri": "https://w3id.org/ontology_association/FYPOEXTIdentifier",
"from_schema": "https://w3id.org/ontology_association/pombase",
"typeof": "string",
"base": "str",
"uri": "http://www.w3.org/2001/XMLSchema#string",
"@type": "TypeDefinition"
},
{
"name": "curie",
"definition_uri": "https://w3id.org/ontology_association/Curie",
"from_schema": "https://w3id.org/ontology_association",
"typeof": "string",
"base": "str",
"uri": "http://www.w3.org/2001/XMLSchema#string",
"@type": "TypeDefinition"
},
{
"name": "symbol_type",
"definition_uri": "https://w3id.org/ontology_association/SymbolType",
"from_schema": "https://w3id.org/ontology_association",
"typeof": "string",
"base": "str",
"uri": "http://www.w3.org/2001/XMLSchema#string",
"@type": "TypeDefinition"
},
{
"name": "name_type",
"definition_uri": "https://w3id.org/ontology_association/NameType",
"from_schema": "https://w3id.org/ontology_association",
"typeof": "string",
"base": "str",
"uri": "http://www.w3.org/2001/XMLSchema#string",
"@type": "TypeDefinition"
},
{
"name": "string",
"definition_uri": "https://w3id.org/linkml/String",
"description": "A character string",
"from_schema": "https://w3id.org/linkml/types",
"imported_from": "linkml:types",
"base": "str",
"uri": "http://www.w3.org/2001/XMLSchema#string",
"@type": "TypeDefinition"
},
{
"name": "integer",
"definition_uri": "https://w3id.org/linkml/Integer",
"description": "An integer",
"from_schema": "https://w3id.org/linkml/types",
"imported_from": "linkml:types",
"base": "int",
"uri": "http://www.w3.org/2001/XMLSchema#integer",
"@type": "TypeDefinition"
},
{
"name": "boolean",
"definition_uri": "https://w3id.org/linkml/Boolean",
"description": "A binary (true or false) value",
"from_schema": "https://w3id.org/linkml/types",
"imported_from": "linkml:types",
"base": "Bool",
"uri": "http://www.w3.org/2001/XMLSchema#boolean",
"repr": "bool",
"@type": "TypeDefinition"
},
{
"name": "float",
"definition_uri": "https://w3id.org/linkml/Float",
"description": "A real number that conforms to the xsd:float specification",
"from_schema": "https://w3id.org/linkml/types",
"imported_from": "linkml:types",
"base": "float",
"uri": "http://www.w3.org/2001/XMLSchema#float",
"@type": "TypeDefinition"
},
{
"name": "double",
"definition_uri": "https://w3id.org/linkml/Double",
"description": "A real number that conforms to the xsd:double specification",
"from_schema": "https://w3id.org/linkml/types",
"imported_from": "linkml:types",
"base": "float",
"uri": "http://www.w3.org/2001/XMLSchema#double",
"@type": "TypeDefinition"
},
{
"name": "decimal",
"definition_uri": "https://w3id.org/linkml/Decimal",
"description": "A real number with arbitrary precision that conforms to the xsd:decimal specification",
"from_schema": "https://w3id.org/linkml/types",
"imported_from": "linkml:types",
"base": "Decimal",
"uri": "http://www.w3.org/2001/XMLSchema#decimal",
"@type": "TypeDefinition"
},
{
"name": "time",
"definition_uri": "https://w3id.org/linkml/Time",
"description": "A time object represents a (local) time of day, independent of any particular day",
"notes": [
"URI is dateTime because OWL reasoners don't work with straight date or time"
],
"from_schema": "https://w3id.org/linkml/types",
"imported_from": "linkml:types",
"base": "XSDTime",
"uri": "http://www.w3.org/2001/XMLSchema#dateTime",
"repr": "str",
"@type": "TypeDefinition"
},
{
"name": "date",
"definition_uri": "https://w3id.org/linkml/Date",
"description": "a date (year, month and day) in an idealized calendar",
"notes": [
"URI is dateTime because OWL reasoners don't work with straight date or time"
],
"from_schema": "https://w3id.org/linkml/types",
"imported_from": "linkml:types",
"base": "XSDDate",
"uri": "http://www.w3.org/2001/XMLSchema#date",
"repr": "str",
"@type": "TypeDefinition"
},
{
"name": "datetime",
"definition_uri": "https://w3id.org/linkml/Datetime",
"description": "The combination of a date and time",
"from_schema": "https://w3id.org/linkml/types",
"imported_from": "linkml:types",
"base": "XSDDateTime",
"uri": "http://www.w3.org/2001/XMLSchema#dateTime",
"repr": "str",
"@type": "TypeDefinition"
},
{
"name": "uriorcurie",
"definition_uri": "https://w3id.org/linkml/Uriorcurie",
"description": "a URI or a CURIE",
"from_schema": "https://w3id.org/linkml/types",
"imported_from": "linkml:types",
"base": "URIorCURIE",
"uri": "http://www.w3.org/2001/XMLSchema#anyURI",
"repr": "str",
"@type": "TypeDefinition"
},
{
"name": "uri",
"definition_uri": "https://w3id.org/linkml/Uri",
"description": "a complete URI",
"from_schema": "https://w3id.org/linkml/types",
"imported_from": "linkml:types",
"base": "URI",
"uri": "http://www.w3.org/2001/XMLSchema#anyURI",
"repr": "str",
"@type": "TypeDefinition"
},
{
"name": "ncname",
"definition_uri": "https://w3id.org/linkml/Ncname",
"description": "Prefix part of CURIE",
"from_schema": "https://w3id.org/linkml/types",
"imported_from": "linkml:types",
"base": "NCName",
"uri": "http://www.w3.org/2001/XMLSchema#string",
"repr": "str",
"@type": "TypeDefinition"
},
{
"name": "objectidentifier",
"definition_uri": "https://w3id.org/linkml/Objectidentifier",
"description": "A URI or CURIE that represents an object in the model.",
"comments": [
"Used for inheritence and type checking"
],
"from_schema": "https://w3id.org/linkml/types",
"imported_from": "linkml:types",
"base": "ElementIdentifier",
"uri": "http://www.w3.org/ns/shex#iri",
"repr": "str",
"@type": "TypeDefinition"
},
{
"name": "nodeidentifier",
"definition_uri": "https://w3id.org/linkml/Nodeidentifier",
"description": "A URI, CURIE or BNODE that represents a node in a model.",
"from_schema": "https://w3id.org/linkml/types",
"imported_from": "linkml:types",
"base": "NodeIdentifier",
"uri": "http://www.w3.org/ns/shex#nonLiteral",
"repr": "str",
"@type": "TypeDefinition"
}
],
"enums": [
{
"name": "ComplexDiseaseRelation",
"definition_uri": "https://w3id.org/ontology_association/ComplexDiseaseRelation",
"from_schema": "https://w3id.org/biodatamodels/ontology_association/complexpheno",
"permissible_values": [
{
"text": "risk_increased_by_disease"
},
{
"text": "risk_increased_by_exposure"
},
{
"text": "risk_increased_by_phenotype"
},
{
"text": "has_phenotype",
"meaning": "RO:0002200"
}
]
},
{
"name": "gene_ontology_aspect_enum",
"definition_uri": "https://w3id.org/ontology_association/GeneOntologyAspectEnum",
"from_schema": "https://w3id.org/ontology_association/gaf",
"permissible_values": [
{
"text": "F",
"description": "molecular_function",
"meaning": "GO:0003674"
},
{
"text": "P",
"description": "biological_process",
"meaning": "GO:0008150"
},
{
"text": "C",
"description": "cellular_component",
"meaning": "GO:0005575"
}
]
},
{
"name": "gp_entity_type_enum",
"definition_uri": "https://w3id.org/ontology_association/GpEntityTypeEnum",
"from_schema": "https://w3id.org/ontology_association/gaf",
"permissible_values": [
{
"text": "protein_coding_gene",
"meaning": "SO:0001217"
},
{
"text": "ncRNA_gene",
"meaning": "SO:0001263"
},
{
"text": "mRNA",
"meaning": "SO:0000234"
},
{
"text": "ncRNA",
"meaning": "SO:0000655"
},
{
"text": "protein",
"meaning": "PR:000000001"
},
{
"text": "protein-containing complex",
"meaning": "GO:0032991"
},
{
"text": "genetic_marker",
"meaning": "SO:0001645"
}
]
},
{
"name": "gp2term_relation_enum",
"definition_uri": "https://w3id.org/ontology_association/Gp2termRelationEnum",
"from_schema": "https://w3id.org/ontology_association/gaf",
"permissible_values": [
{
"text": "NOT",
"meaning": "owl:complementOf"
},
{
"text": "enables",
"meaning": "RO:0002327"
},
{
"text": "involved_in",
"meaning": "RO:0002331"
},
{
"text": "located_in",
"meaning": "RO:0001025"
},
{
"text": "contributes_to",
"meaning": "RO:0002326"
},
{
"text": "acts_upstream_of",
"meaning": "RO:0002263"
},
{
"text": "part_of",
"meaning": "BFO:0000050"
},
{
"text": "acts_upstream_of_positive_effect",
"meaning": "RO:0004034"
},
{
"text": "is_active_in",
"meaning": "RO:0002432"
},
{
"text": "acts_upstream_of_negative_effect",
"meaning": "RO:0004035"
},
{
"text": "colocalizes_with",
"meaning": "RO:0002325"
},
{
"text": "acts_upstream_of_or_within",
"meaning": "RO:0002264"
},
{
"text": "acts_upstream_of_or_within_positive_effect",
"meaning": "RO:0004032"
},
{
"text": "acts_upstream_of_or_within_negative_effect",
"meaning": "RO:0004033"
}
]
},
{
"name": "simple_qualifier_enum",
"definition_uri": "https://w3id.org/ontology_association/SimpleQualifierEnum",
"from_schema": "https://w3id.org/ontology_association/gaf",
"permissible_values": [
{
"text": "NOT",
"meaning": "owl:complementOf"
},
{
"text": "contributes_to",
"meaning": "RO:0002326"
}
]
},
{
"name": "Interaction_detection_method_enum",
"definition_uri": "https://w3id.org/mitabInteractionDetectionMethodEnum",
"from_schema": "https://w3id.org/mitab",
"permissible_values": [
{
"text": "psi-mi:\"MI:0107\"(surface plasmon resonance)",
"description": "surface plasmon resonance",
"meaning": "MI:0107"
},
{
"text": "psi-mi:\"MI:0410\"(3D electron microscopy)",
"description": "3D electron microscopy",
"meaning": "MI:0410"
},
{
"text": "psi-mi:\"MI:0096\"(pull down)",
"description": "pull down",
"meaning": "MI:0096"
},
{
"text": "psi-mi:\"MI:0007\"(anti tag coimmunoprecipitation)",
"description": "anti tag coimmunoprecipitation",
"meaning": "MI:0007"
},
{
"text": "psi-mi:\"MI:0006\"(anti bait coimmunoprecipitation)",
"description": "anti bait coimmunoprecipitation",
"meaning": "MI:0006"
},
{
"text": "psi-mi:\"MI:0424\"(protein kinase assay)",
"description": "psi-mi:\"MI:0424\"(protein kinase assay)",
"meaning": "MI:0424"
},
{
"text": "psi-mi:\"MI:0676\"(tandem affinity purification)",
"description": "tandem affinity purification",
"meaning": "MI:0676"
},
{
"text": "psi-mi:\"MI:0114\"(x-ray crystallography)",
"description": "x-ray crystallography",
"meaning": "MI:0114"
}
]
},
{
"name": "Interaction_type_enum",
"definition_uri": "https://w3id.org/mitabInteractionTypeEnum",
"from_schema": "https://w3id.org/mitab",
"permissible_values": [
{
"text": "psi-mi:\"MI:0915\"(physical association)",
"description": "psi-mi:\"MI:0915\"(physical association)",
"meaning": "MI:0915"
},
{
"text": "psi-mi:\"MI:0407\"(direct interaction)",
"description": "psi-mi:\"MI:0407\"(direct interaction)",
"meaning": "MI:0407"
},
{
"text": "psi-mi:\"MI:0217\"(phosphorylation reaction)",
"description": "psi-mi:\"MI:0217\"(phosphorylation reaction)",
"meaning": "MI:0217"
},
{
"text": "psi-mi:\"MI:0914\"(association)",
"description": "psi-mi:\"MI:0914\"(association)",
"meaning": "MI:0914"
}
]
},
{
"name": "Expansion_method_enum",
"definition_uri": "https://w3id.org/mitabExpansionMethodEnum",
"from_schema": "https://w3id.org/mitab",
"permissible_values": [
{
"text": "-",
"description": "-"
},
{
"text": "psi-mi:\"MI:1060\"(spoke expansion)",
"description": "psi-mi:\"MI:1060\"(spoke expansion)",
"meaning": "MI:1060"
}
]
},
{
"name": "Biological_role_interactor_enum",
"definition_uri": "https://w3id.org/mitabBiologicalRoleInteractorEnum",
"from_schema": "https://w3id.org/mitab",
"permissible_values": [
{
"text": "psi-mi:\"MI:0499\"(unspecified role)",
"description": "psi-mi:\"MI:0499\"(unspecified role)"
},
{
"text": "psi-mi:\"MI:0502\"(enzyme target)",
"description": "psi-mi:\"MI:0502\"(enzyme target)"
},
{
"text": "psi-mi:\"MI:0501\"(enzyme)",
"description": "psi-mi:\"MI:0501\"(enzyme)"
}
]
},
{
"name": "Experimental_role_interactor_enum",
"definition_uri": "https://w3id.org/mitabExperimentalRoleInteractorEnum",
"from_schema": "https://w3id.org/mitab",
"permissible_values": [
{
"text": "psi-mi:\"MI:0498\"(prey)",
"description": "psi-mi:\"MI:0498\"(prey)"
},
{
"text": "psi-mi:\"MI:0497\"(neutral component)",
"description": "psi-mi:\"MI:0497\"(neutral component)"
},
{
"text": "psi-mi:\"MI:0496\"(bait)",
"description": "psi-mi:\"MI:0496\"(bait)"
}
]
},
{
"name": "Interaction_Xref_enum",
"definition_uri": "https://w3id.org/mitabInteractionXrefEnum",
"from_schema": "https://w3id.org/mitab",
"permissible_values": [
{
"text": "-",
"description": "-"
},
{
"text": "go:\"GO:0006468\"(protein phosphorylation)",
"description": "go:\"GO:0006468\"(protein phosphorylation)"
},
{
"text": "psi-mi:\"MI:0465\"(dip)",
"description": "psi-mi:\"MI:0465\"(dip)"
},
{
"text": "go:\"GO:0004672\"(protein kinase activity)",
"description": "go:\"GO:0004672\"(protein kinase activity)"
}
]
},
{
"name": "Negative_enum",
"definition_uri": "https://w3id.org/mitabNegativeEnum",
"from_schema": "https://w3id.org/mitab",
"permissible_values": [
{
"text": "false",
"description": "false"
}
]
},
{
"name": "Stoichiometry_interactor_enum",
"definition_uri": "https://w3id.org/mitabStoichiometryInteractorEnum",
"from_schema": "https://w3id.org/mitab",
"permissible_values": [
{
"text": "-",
"description": "-"
},
{
"text": "1",
"description": "1"
}
]
},
{
"name": "Biological_Effect_interactor_enum",
"definition_uri": "https://w3id.org/mitabBiologicalEffectInteractorEnum",
"from_schema": "https://w3id.org/mitab",
"permissible_values": [
{
"text": "-",
"description": "-"
}
]
},
{
"name": "Causal_Regulatory_Mechanism_enum",
"definition_uri": "https://w3id.org/mitabCausalRegulatoryMechanismEnum",
"from_schema": "https://w3id.org/mitab",
"permissible_values": [
{
"text": "psi-mi:\"MI:2246\"(indirect causal regulation)",
"description": "psi-mi:\"MI:2246\"(indirect causal regulation)"
},
{
"text": "psi-mi:\"MI:2249\"(post transcriptional regulation)",
"description": "psi-mi:\"MI:2249\"(post transcriptional regulation)"
},
{
"text": "psi-mi:\"MI:2248\"(translation regulation)",
"description": "psi-mi:\"MI:2248\"(translation regulation)"
},
{
"text": "-",
"description": "-"
},
{
"text": "psi-mi:\"MI:2247\"(transcriptional regulation)",
"description": "psi-mi:\"MI:2247\"(transcriptional regulation)"
}
]
},
{
"name": "Database_name_enum",
"definition_uri": "https://w3id.org/ontology_association/DatabaseNameEnum",
"from_schema": "https://w3id.org/ontology_association/pombase",
"permissible_values": [
{
"text": "PomBase",
"description": "PomBase"
}
]
},
{
"name": "Expression_enum",
"definition_uri": "https://w3id.org/ontology_association/ExpressionEnum",
"from_schema": "https://w3id.org/ontology_association/pombase",
"permissible_values": [
{
"text": "Wild type product level",
"description": "Wild type product level"
},
{
"text": "Not assayed",
"description": "Not assayed"
},
{
"text": "Null",
"description": "Null"
},
{
"text": "Endogenous",
"description": "Endogenous"
},
{
"text": "Knockdown",
"description": "Knockdown"
},
{
"text": "Overexpression",
"description": "Overexpression"
}
]
},
{
"name": "Allele_type_enum",
"definition_uri": "https://w3id.org/ontology_association/AlleleTypeEnum",
"from_schema": "https://w3id.org/ontology_association/pombase",
"permissible_values": [
{
"text": "deletion",
"description": "deletion"
},
{
"text": "nucleotide_mutation",
"description": "nucleotide_mutation"
},
{
"text": "amino_acid_insertion",
"description": "amino_acid_insertion"
},
{
"text": "other",
"description": "other"
},
{
"text": "partial_amino_acid_deletion",
"description": "partial_amino_acid_deletion"
},
{
"text": "nonsense_mutation",
"description": "nonsense_mutation"
},
{
"text": "partial_nucleotide_deletion",
"description": "partial_nucleotide_deletion"
},
{
"text": "amino_acid_deletion_and_mutation",
"description": "amino_acid_deletion_and_mutation"
},
{
"text": "wild_type",
"description": "wild_type"
},
{
"text": "amino_acid_insertion_and_mutation",
"description": "amino_acid_insertion_and_mutation"
},
{
"text": "amino_acid_mutation",
"description": "amino_acid_mutation"
},
{
"text": "unrecorded",
"description": "unrecorded"
},
{
"text": "nucleotide_insertion",
"description": "nucleotide_insertion"
},
{
"text": "unknown",
"description": "unknown"
},
{
"text": "disruption",
"description": "disruption"
}
]
},
{
"name": "Evidence_enum",
"definition_uri": "https://w3id.org/ontology_association/EvidenceEnum",
"from_schema": "https://w3id.org/ontology_association/pombase",
"permissible_values": [
{
"text": "Particle size and count assay",
"description": "Particle size and count assay"
},
{
"text": "gel electrophoresis evidence",
"description": "gel electrophoresis evidence"
},
{
"text": "Flow cytometry data",
"description": "Flow cytometry data"
},
{
"text": "Chromatin immunoprecipitation experiment",
"description": "Chromatin immunoprecipitation experiment"
},
{
"text": "quantitative PCR",
"description": "quantitative PCR"
},
{
"text": "Microscopy",
"description": "Microscopy"
},
{
"text": "Electrophoretic mobility shift assay data",
"description": "Electrophoretic mobility shift assay data"
},
{
"text": "Epitope-tagged protein immunolocalization experiment data",
"description": "Epitope-tagged protein immunolocalization experiment data"
},
{
"text": "Enzyme assay data",
"description": "Enzyme assay data"
},
{
"text": "sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence",
"description": "sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence"
},
{
"text": "microscopy evidence used in manual assertion",
"description": "microscopy evidence used in manual assertion"
},
{
"text": "Co-immunoprecipitation experiment",
"description": "Co-immunoprecipitation experiment"
},
{
"text": "Plasmid maintenance assay evidence",
"description": "Plasmid maintenance assay evidence"
},
{
"text": "reporter gene assay evidence",
"description": "reporter gene assay evidence"
},
{
"text": "experimental phenotypic evidence",
"description": "experimental phenotypic evidence"
},
{
"text": "transcript expression level evidence",
"description": "transcript expression level evidence"
},
{
"text": "Other direct assay",
"description": "Other direct assay"
},
{
"text": "Chromatography evidence",
"description": "Chromatography evidence"
},
{
"text": "Immunolocalization experiment data",
"description": "Immunolocalization experiment data"
},
{
"text": "Northern assay evidence",
"description": "Northern assay evidence"
},
{
"text": "Other",
"description": "Other"
},
{
"text": "cell growth assay evidence",
"description": "cell growth assay evidence"
},
{
"text": "tryptic phosphopeptide mapping assay evidence used in automatic assertion",
"description": "tryptic phosphopeptide mapping assay evidence used in automatic assertion"
},
{
"text": "high throughput nucleotide sequencing assay evidence",
"description": "high throughput nucleotide sequencing assay evidence"
},
{
"text": "competitive growth assay evidence",
"description": "competitive growth assay evidence"
},
{
"text": "western blot evidence used in manual assertion",
"description": "western blot evidence used in manual assertion"
},
{
"text": "Substance quantification evidence",
"description": "Substance quantification evidence"
},
{
"text": "Western blot assay",
"description": "Western blot assay"
}
]
}
],
"slots": [
{
"name": "disease_id",
"definition_uri": "https://w3id.org/ontology_association/disease_id",
"description": "CURIE for ",
"examples": [
{
"value": "MONDO:0005098",
"@type": "Example"
}
],
"from_schema": "https://w3id.org/biodatamodels/ontology_association/complexpheno",
"slot_uri": "https://w3id.org/ontology_association/disease_id",
"owner": "ComplexDiseaseAssociation",
"domain_of": [
"ComplexDiseaseAssociation"
],
"range": "MONDO_identifier",
"@type": "SlotDefinition"
},
{
"name": "disease_name",
"definition_uri": "https://w3id.org/ontology_association/disease_name",
"examples": [
{
"value": "Stroke disorder",
"@type": "Example"
}
],
"from_schema": "https://w3id.org/biodatamodels/ontology_association/complexpheno",
"slot_uri": "https://w3id.org/ontology_association/disease_name",
"owner": "ComplexDiseaseAssociation",
"domain_of": [
"ComplexDiseaseAssociation"
],
"range": "string",
"@type": "SlotDefinition"
},
{
"name": "term_id",
"definition_uri": "https://w3id.org/ontology_association/term_id",
"examples": [
{
"value": "NCIT:C1543",
"@type": "Example"
},
{