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Add label and doc tags to CWL adapters #2

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PauAndrio opened this issue Dec 8, 2019 · 0 comments
Open

Add label and doc tags to CWL adapters #2

PauAndrio opened this issue Dec 8, 2019 · 0 comments

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@PauAndrio
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  • CWL adapters: afegir label i doc:

#!/usr/bin/env cwl-runner
cwlVersion: v1.0
class: CommandLineTool

label: An example tool demonstrating metadata.
doc: blabla

baseCommand: cpptraj_average
hints:
DockerRequirement:
dockerPull: mmbirb/biobb_analysis:latest
inputs:
input_top_path:
label: An example tool demonstrating metadata.
type: File
inputBinding:
position: 1
prefix: --input_top_path

https://www.commonwl.org/user_guide/17-metadata/index.html

  • container_working_dir a docs i container Specific

  • no passar res al user_id

  • afegir container_working_dir=self.container_working_dir a create_cmd_line

  • canviar user_uid per container_user_uid a create_cmd_line

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