biobb_pdb_tools is a swiss army knife for manipulating and editing PDB files. The latest documentation of this package can be found in our readthedocs site: latest API documentation.
v4.2.0 2024.1
Using PIP:
Important: PIP only installs the package. All the dependencies must be installed separately. To perform a complete installation, please use ANACONDA, DOCKER or SINGULARITY.
-
Installation:
pip install "biobb_pdb_tools>=4.2.0" -
Usage: Python API documentation
Using ANACONDA:
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Installation:
conda install -c bioconda "biobb_pdb_tools>=4.2.0" -
Usage: With conda installation BioBBs can be used with the Python API documentation and the Command Line documentation
Using DOCKER:
-
Installation:
docker pull quay.io/biocontainers/biobb_pdb_tools:4.2.0--pyhdfd78af_0 -
Usage:
docker run quay.io/biocontainers/biobb_pdb_tools:4.2.0--pyhdfd78af_0 <command>
Using SINGULARITY:
MacOS users: it's strongly recommended to avoid Singularity and use Docker as containerization system.
-
Installation:
singularity pull --name biobb_pdb_tools.sif https://depot.galaxyproject.org/singularity/biobb_pdb_tools:4.2.0--pyhdfd78af_0 -
Usage:
singularity exec biobb_pdb_tools.sif <command>
The command list and specification can be found at the Command Line documentation.
This software has been developed in the MMB group at the BSC & IRB for the European BioExcel, funded by the European Commission (EU H2020 823830, EU H2020 675728).
- (c) 2015-2024 Barcelona Supercomputing Center
- (c) 2015-2024 Institute for Research in Biomedicine
Licensed under the Apache License 2.0, see the file LICENSE for details.
