CIRI-long: circular RNA identifier using long-read sequencing data

Circular RNA Identification for Long-Reads Nanopore Sequencing Data

Documentation

Documentation is available online at https://ciri-cookbook.readthedocs.io/en/latest

Author

Authors: Jinyang Zhang(zhangjinyang@biols.ac.cn), Fangqing Zhao(zhfq@biols.ac.cn)

Maintainer: Jinyang Zhang

Release Notes

• version 1.1.0: Add convert_bed.py, update pyccs dependency, fixed bugs
• version 1.0.3: Add output of circRNA isoform usage index, fixed bugs
• version 1.0.2: Add fast mode for ccs detection and option for user-provided circRNA annotation
• version 1.0.1: Fixed bug
• version 1.0: First released version

License

The code is released under the MIT License. See the LICENSE file for more detail

Citing CIRI-long

Zhang, J., Hou, L., Zuo, Z., Ji, P., Zhang, X., Xue, Y., & Zhao, F. (2021). Comprehensive profiling of circular RNAs with nanopore sequencing and CIRI-long. Nature Biotechnology. https://doi.org/10.1038/s41587-021-00842-6