ChangeLog.rst

Whats' new, what has changed

Revision

0.4.1

• starting converter tool

Revision

0.4.0

• Stable version on bioconda (remove sphinx-gallery from dependencies since it is only used for the documentation.

Revision

0.3.4

• remove stats_dev sub_directory

Revision

0.3.3

• EM class has a new plot function so that a plot can be run without doing the estimation but by providing the parameter of the model. This is a better model/data/view abstraction.
• Fix tests in documentation

Revision

0.3.2:

• remove deprecated warning

Revision

0.3.1:

• Update mixture.EM method to speedup the code by factor 4

Revision

0.3.0:

• Cleanup and doc update
• Update notebooks to be py3.5 compatible
• Some API changes in the Taxonomy module used in Sequana package

Revision 0.2.0

• NEWS

  • add boxplot module.

Revision 0.1.4

• BUG FIXES: cleanup MANIFEST

Revision 0.1.3

• BUG FIXES:

  • a py3 typo.
  • fixing complexes module
  • remove useless db package

Revision 0.0.7

• NEWS
  • add taxonomy module.
  • add goid module.
  • Fixed bunch of Python3 issues. most important in rtools packages to use Popen instead of popen4 and manipulate bytes vs strings.
  • All tests passes under Python2.7 and Python3.4

Revision 0.0.6

• CHANGES
  • viz package:
    • refactored most of the functions/classes to be have more consistent input data for the constructor and more consistent parameters for the plot() methods.
    • Hist2d is now called Hist2D
• BUG FIXES
• NEWS
  • add new module in viz package: hinton, core (to factorise code)
  • add new notebooks related to the viz package.