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After providing t-SNE 'Data" as 'Reference data" and a list of marker genes as "Genes" to the Annotator widget, it correctly generates the annotation graphic and gives the progress as 100% but then continues to run (run indicator continues to circle) and stalls the workflow. Using the basic example given in the help for the Annotator widget will generate the stall. The error log gives:
/Applications/Orange3.app/Contents/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/sklearn/metrics/pairwise.py:1429: UserWarning: Multiprocessing-backed parallel loops cannot be nested below threads, setting n_jobs=1 if effective_n_jobs(n_jobs) == 1: --------------------------- RuntimeError Exception ---------------------------- Traceback (most recent call last): File "/Applications/Orange3.app/Contents/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/Orange/widgets/utils/concurrent.py", line 591, in _on_task_done super()._on_task_done(future) File "/Applications/Orange3.app/Contents/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/Orange/widgets/utils/concurrent.py", line 549, in _on_task_done self.on_done(future.result()) File "/Applications/Orange3.app/Contents/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/orangecontrib/bioinformatics/widgets/OWAnnotateProjection.py", line 589, in on_done self.commit() File "/Applications/Orange3.app/Contents/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/orangewidget/gui.py", line 1839, in __call__ raise RuntimeError( RuntimeError: This function is deferred; explicitly call commit.deferred or commit.now
I'm running Orange 3.32 on a MacBook Pro (2015), OSx 12.4
The text was updated successfully, but these errors were encountered:
After providing t-SNE 'Data" as 'Reference data" and a list of marker genes as "Genes" to the Annotator widget, it correctly generates the annotation graphic and gives the progress as 100% but then continues to run (run indicator continues to circle) and stalls the workflow. Using the basic example given in the help for the Annotator widget will generate the stall. The error log gives:
/Applications/Orange3.app/Contents/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/sklearn/metrics/pairwise.py:1429: UserWarning: Multiprocessing-backed parallel loops cannot be nested below threads, setting n_jobs=1 if effective_n_jobs(n_jobs) == 1: --------------------------- RuntimeError Exception ---------------------------- Traceback (most recent call last): File "/Applications/Orange3.app/Contents/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/Orange/widgets/utils/concurrent.py", line 591, in _on_task_done super()._on_task_done(future) File "/Applications/Orange3.app/Contents/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/Orange/widgets/utils/concurrent.py", line 549, in _on_task_done self.on_done(future.result()) File "/Applications/Orange3.app/Contents/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/orangecontrib/bioinformatics/widgets/OWAnnotateProjection.py", line 589, in on_done self.commit() File "/Applications/Orange3.app/Contents/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/orangewidget/gui.py", line 1839, in __call__ raise RuntimeError( RuntimeError: This function is deferred; explicitly call commit.deferred or commit.now
I'm running Orange 3.32 on a MacBook Pro (2015), OSx 12.4
The text was updated successfully, but these errors were encountered: