Renamed module directory

biolib · Jan 25, 2010 · 3d0b487 · 3d0b487
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diff --git a/src/clibs/staden_io_lib-1.11.6/CHANGES → src/clibs/staden_io_lib/CHANGES b/src/clibs/staden_io_lib-1.11.6/CHANGES → src/clibs/staden_io_lib/CHANGES
diff --git a/src/clibs/staden_io_lib-1.11.6/COPYRIGHT → src/clibs/staden_io_lib/COPYRIGHT b/src/clibs/staden_io_lib-1.11.6/COPYRIGHT → src/clibs/staden_io_lib/COPYRIGHT
diff --git a/src/clibs/staden_io_lib-1.11.6/ChangeLog → src/clibs/staden_io_lib/ChangeLog b/src/clibs/staden_io_lib-1.11.6/ChangeLog → src/clibs/staden_io_lib/ChangeLog
diff --git a/src/clibs/staden_io_lib-1.11.6/README → src/clibs/staden_io_lib/README b/src/clibs/staden_io_lib-1.11.6/README → src/clibs/staden_io_lib/README
diff --git a/...staden_io_lib-1.11.6/README_STADEN-IO_LIB → src/clibs/staden_io_lib/README_STADEN-IO_LIB b/...staden_io_lib-1.11.6/README_STADEN-IO_LIB → src/clibs/staden_io_lib/README_STADEN-IO_LIB
diff --git a/...taden_io_lib-1.11.6/io_lib/CMakeLists.txt → ...clibs/staden_io_lib/io_lib/CMakeLists.txt b/...taden_io_lib-1.11.6/io_lib/CMakeLists.txt → ...clibs/staden_io_lib/io_lib/CMakeLists.txt
diff --git a/src/clibs/staden_io_lib-1.11.6/io_lib/Read.c → src/clibs/staden_io_lib/io_lib/Read.c b/src/clibs/staden_io_lib-1.11.6/io_lib/Read.c → src/clibs/staden_io_lib/io_lib/Read.c
diff --git a/src/clibs/staden_io_lib-1.11.6/io_lib/Read.h → src/clibs/staden_io_lib/io_lib/Read.h b/src/clibs/staden_io_lib-1.11.6/io_lib/Read.h → src/clibs/staden_io_lib/io_lib/Read.h
diff --git a/src/clibs/staden_io_lib-1.11.6/io_lib/abi.h → src/clibs/staden_io_lib/io_lib/abi.h b/src/clibs/staden_io_lib-1.11.6/io_lib/abi.h → src/clibs/staden_io_lib/io_lib/abi.h
diff --git a/src/clibs/staden_io_lib-1.11.6/io_lib/alf.h → src/clibs/staden_io_lib/io_lib/alf.h b/src/clibs/staden_io_lib-1.11.6/io_lib/alf.h → src/clibs/staden_io_lib/io_lib/alf.h
diff --git a/...clibs/staden_io_lib-1.11.6/io_lib/array.c → src/clibs/staden_io_lib/io_lib/array.c b/...clibs/staden_io_lib-1.11.6/io_lib/array.c → src/clibs/staden_io_lib/io_lib/array.c
diff --git a/...clibs/staden_io_lib-1.11.6/io_lib/array.h → src/clibs/staden_io_lib/io_lib/array.h b/...clibs/staden_io_lib-1.11.6/io_lib/array.h → src/clibs/staden_io_lib/io_lib/array.h
diff --git a/...bs/staden_io_lib-1.11.6/io_lib/compress.c → src/clibs/staden_io_lib/io_lib/compress.c b/...bs/staden_io_lib-1.11.6/io_lib/compress.c → src/clibs/staden_io_lib/io_lib/compress.c
diff --git a/...bs/staden_io_lib-1.11.6/io_lib/compress.h → src/clibs/staden_io_lib/io_lib/compress.h b/...bs/staden_io_lib-1.11.6/io_lib/compress.h → src/clibs/staden_io_lib/io_lib/compress.h
diff --git a/...staden_io_lib-1.11.6/io_lib/compression.c → src/clibs/staden_io_lib/io_lib/compression.c b/...staden_io_lib-1.11.6/io_lib/compression.c → src/clibs/staden_io_lib/io_lib/compression.c
diff --git a/...staden_io_lib-1.11.6/io_lib/compression.h → src/clibs/staden_io_lib/io_lib/compression.h b/...staden_io_lib-1.11.6/io_lib/compression.h → src/clibs/staden_io_lib/io_lib/compression.h
diff --git a/...staden_io_lib-1.11.6/io_lib/ctfCompress.c → src/clibs/staden_io_lib/io_lib/ctfCompress.c b/...staden_io_lib-1.11.6/io_lib/ctfCompress.c → src/clibs/staden_io_lib/io_lib/ctfCompress.c
diff --git a/...io_lib-1.11.6/io_lib/deflate_interlaced.c → ...staden_io_lib/io_lib/deflate_interlaced.c b/...io_lib-1.11.6/io_lib/deflate_interlaced.c → ...staden_io_lib/io_lib/deflate_interlaced.c
diff --git a/...io_lib-1.11.6/io_lib/deflate_interlaced.h → ...staden_io_lib/io_lib/deflate_interlaced.h b/...io_lib-1.11.6/io_lib/deflate_interlaced.h → ...staden_io_lib/io_lib/deflate_interlaced.h
diff --git a/...clibs/staden_io_lib-1.11.6/io_lib/error.c → src/clibs/staden_io_lib/io_lib/error.c b/...clibs/staden_io_lib-1.11.6/io_lib/error.c → src/clibs/staden_io_lib/io_lib/error.c
diff --git a/...clibs/staden_io_lib-1.11.6/io_lib/error.h → src/clibs/staden_io_lib/io_lib/error.h b/...clibs/staden_io_lib-1.11.6/io_lib/error.h → src/clibs/staden_io_lib/io_lib/error.h
diff --git a/...s/staden_io_lib-1.11.6/io_lib/expFileIO.c → src/clibs/staden_io_lib/io_lib/expFileIO.c b/...s/staden_io_lib-1.11.6/io_lib/expFileIO.c → src/clibs/staden_io_lib/io_lib/expFileIO.c
diff --git a/...s/staden_io_lib-1.11.6/io_lib/expFileIO.h → src/clibs/staden_io_lib/io_lib/expFileIO.h b/...s/staden_io_lib-1.11.6/io_lib/expFileIO.h → src/clibs/staden_io_lib/io_lib/expFileIO.h
diff --git a/...clibs/staden_io_lib-1.11.6/io_lib/files.c → src/clibs/staden_io_lib/io_lib/files.c b/...clibs/staden_io_lib-1.11.6/io_lib/files.c → src/clibs/staden_io_lib/io_lib/files.c
diff --git a/src/clibs/staden_io_lib-1.11.6/io_lib/find.c → src/clibs/staden_io_lib/io_lib/find.c b/src/clibs/staden_io_lib-1.11.6/io_lib/find.c → src/clibs/staden_io_lib/io_lib/find.c
diff --git a/...libs/staden_io_lib-1.11.6/io_lib/fpoint.c → src/clibs/staden_io_lib/io_lib/fpoint.c b/...libs/staden_io_lib-1.11.6/io_lib/fpoint.c → src/clibs/staden_io_lib/io_lib/fpoint.c
diff --git a/...libs/staden_io_lib-1.11.6/io_lib/fpoint.h → src/clibs/staden_io_lib/io_lib/fpoint.h b/...libs/staden_io_lib-1.11.6/io_lib/fpoint.h → src/clibs/staden_io_lib/io_lib/fpoint.h
diff --git a/.../staden_io_lib-1.11.6/io_lib/hash_table.c → src/clibs/staden_io_lib/io_lib/hash_table.c b/.../staden_io_lib-1.11.6/io_lib/hash_table.c → src/clibs/staden_io_lib/io_lib/hash_table.c
diff --git a/.../staden_io_lib-1.11.6/io_lib/hash_table.h → src/clibs/staden_io_lib/io_lib/hash_table.h b/.../staden_io_lib-1.11.6/io_lib/hash_table.h → src/clibs/staden_io_lib/io_lib/hash_table.h
diff --git a/...en_io_lib-1.11.6/io_lib/jenkins_lookup3.c → ...bs/staden_io_lib/io_lib/jenkins_lookup3.c b/...en_io_lib-1.11.6/io_lib/jenkins_lookup3.c → ...bs/staden_io_lib/io_lib/jenkins_lookup3.c
diff --git a/...en_io_lib-1.11.6/io_lib/jenkins_lookup3.h → ...bs/staden_io_lib/io_lib/jenkins_lookup3.h b/...en_io_lib-1.11.6/io_lib/jenkins_lookup3.h → ...bs/staden_io_lib/io_lib/jenkins_lookup3.h
diff --git a/...clibs/staden_io_lib-1.11.6/io_lib/mFILE.c → src/clibs/staden_io_lib/io_lib/mFILE.c b/...clibs/staden_io_lib-1.11.6/io_lib/mFILE.c → src/clibs/staden_io_lib/io_lib/mFILE.c
diff --git a/...clibs/staden_io_lib-1.11.6/io_lib/mFILE.h → src/clibs/staden_io_lib/io_lib/mFILE.h b/...clibs/staden_io_lib-1.11.6/io_lib/mFILE.h → src/clibs/staden_io_lib/io_lib/mFILE.h
diff --git a/...ibs/staden_io_lib-1.11.6/io_lib/mach-io.c → src/clibs/staden_io_lib/io_lib/mach-io.c b/...ibs/staden_io_lib-1.11.6/io_lib/mach-io.c → src/clibs/staden_io_lib/io_lib/mach-io.c
diff --git a/...ibs/staden_io_lib-1.11.6/io_lib/mach-io.h → src/clibs/staden_io_lib/io_lib/mach-io.h b/...ibs/staden_io_lib-1.11.6/io_lib/mach-io.h → src/clibs/staden_io_lib/io_lib/mach-io.h
diff --git a/src/clibs/staden_io_lib-1.11.6/io_lib/misc.h → src/clibs/staden_io_lib/io_lib/misc.h b/src/clibs/staden_io_lib-1.11.6/io_lib/misc.h → src/clibs/staden_io_lib/io_lib/misc.h
diff --git a/...bs/staden_io_lib-1.11.6/io_lib/misc_scf.c → src/clibs/staden_io_lib/io_lib/misc_scf.c b/...bs/staden_io_lib-1.11.6/io_lib/misc_scf.c → src/clibs/staden_io_lib/io_lib/misc_scf.c
diff --git a/...en_io_lib-1.11.6/io_lib/open_trace_file.c → ...bs/staden_io_lib/io_lib/open_trace_file.c b/...en_io_lib-1.11.6/io_lib/open_trace_file.c → ...bs/staden_io_lib/io_lib/open_trace_file.c
diff --git a/...en_io_lib-1.11.6/io_lib/open_trace_file.h → ...bs/staden_io_lib/io_lib/open_trace_file.h b/...en_io_lib-1.11.6/io_lib/open_trace_file.h → ...bs/staden_io_lib/io_lib/open_trace_file.h
diff --git a/src/clibs/staden_io_lib-1.11.6/io_lib/os.h → src/clibs/staden_io_lib/io_lib/os.h b/src/clibs/staden_io_lib-1.11.6/io_lib/os.h → src/clibs/staden_io_lib/io_lib/os.h
diff --git a/...clibs/staden_io_lib-1.11.6/io_lib/plain.h → src/clibs/staden_io_lib/io_lib/plain.h b/...clibs/staden_io_lib-1.11.6/io_lib/plain.h → src/clibs/staden_io_lib/io_lib/plain.h
diff --git a/.../staden_io_lib-1.11.6/io_lib/read_alloc.c → src/clibs/staden_io_lib/io_lib/read_alloc.c b/.../staden_io_lib-1.11.6/io_lib/read_alloc.c → src/clibs/staden_io_lib/io_lib/read_alloc.c
diff --git a/...bs/staden_io_lib-1.11.6/io_lib/read_scf.c → src/clibs/staden_io_lib/io_lib/read_scf.c b/...bs/staden_io_lib-1.11.6/io_lib/read_scf.c → src/clibs/staden_io_lib/io_lib/read_scf.c
diff --git a/src/clibs/staden_io_lib-1.11.6/io_lib/scf.h → src/clibs/staden_io_lib/io_lib/scf.h b/src/clibs/staden_io_lib-1.11.6/io_lib/scf.h → src/clibs/staden_io_lib/io_lib/scf.h
diff --git a/.../staden_io_lib-1.11.6/io_lib/scf_extras.c → src/clibs/staden_io_lib/io_lib/scf_extras.c b/.../staden_io_lib-1.11.6/io_lib/scf_extras.c → src/clibs/staden_io_lib/io_lib/scf_extras.c
diff --git a/.../staden_io_lib-1.11.6/io_lib/scf_extras.h → src/clibs/staden_io_lib/io_lib/scf_extras.h b/.../staden_io_lib-1.11.6/io_lib/scf_extras.h → src/clibs/staden_io_lib/io_lib/scf_extras.h
diff --git a/...bs/staden_io_lib-1.11.6/io_lib/seqIOABI.c → src/clibs/staden_io_lib/io_lib/seqIOABI.c b/...bs/staden_io_lib-1.11.6/io_lib/seqIOABI.c → src/clibs/staden_io_lib/io_lib/seqIOABI.c
diff --git a/...bs/staden_io_lib-1.11.6/io_lib/seqIOABI.h → src/clibs/staden_io_lib/io_lib/seqIOABI.h b/...bs/staden_io_lib-1.11.6/io_lib/seqIOABI.h → src/clibs/staden_io_lib/io_lib/seqIOABI.h
diff --git a/...bs/staden_io_lib-1.11.6/io_lib/seqIOALF.c → src/clibs/staden_io_lib/io_lib/seqIOALF.c b/...bs/staden_io_lib-1.11.6/io_lib/seqIOALF.c → src/clibs/staden_io_lib/io_lib/seqIOALF.c
diff --git a/...bs/staden_io_lib-1.11.6/io_lib/seqIOCTF.c → src/clibs/staden_io_lib/io_lib/seqIOCTF.c b/...bs/staden_io_lib-1.11.6/io_lib/seqIOCTF.c → src/clibs/staden_io_lib/io_lib/seqIOCTF.c
diff --git a/...bs/staden_io_lib-1.11.6/io_lib/seqIOCTF.h → src/clibs/staden_io_lib/io_lib/seqIOCTF.h b/...bs/staden_io_lib-1.11.6/io_lib/seqIOCTF.h → src/clibs/staden_io_lib/io_lib/seqIOCTF.h
diff --git a/.../staden_io_lib-1.11.6/io_lib/seqIOPlain.c → src/clibs/staden_io_lib/io_lib/seqIOPlain.c b/.../staden_io_lib-1.11.6/io_lib/seqIOPlain.c → src/clibs/staden_io_lib/io_lib/seqIOPlain.c
diff --git a/src/clibs/staden_io_lib-1.11.6/io_lib/sff.c → src/clibs/staden_io_lib/io_lib/sff.c b/src/clibs/staden_io_lib-1.11.6/io_lib/sff.c → src/clibs/staden_io_lib/io_lib/sff.c
diff --git a/src/clibs/staden_io_lib-1.11.6/io_lib/sff.h → src/clibs/staden_io_lib/io_lib/sff.h b/src/clibs/staden_io_lib-1.11.6/io_lib/sff.h → src/clibs/staden_io_lib/io_lib/sff.h
diff --git a/src/clibs/staden_io_lib-1.11.6/io_lib/srf.c → src/clibs/staden_io_lib/io_lib/srf.c b/src/clibs/staden_io_lib-1.11.6/io_lib/srf.c → src/clibs/staden_io_lib/io_lib/srf.c
diff --git a/src/clibs/staden_io_lib-1.11.6/io_lib/srf.h → src/clibs/staden_io_lib/io_lib/srf.h b/src/clibs/staden_io_lib-1.11.6/io_lib/srf.h → src/clibs/staden_io_lib/io_lib/srf.h
diff --git a/.../staden_io_lib-1.11.6/io_lib/stdio_hack.h → src/clibs/staden_io_lib/io_lib/stdio_hack.h b/.../staden_io_lib-1.11.6/io_lib/stdio_hack.h → src/clibs/staden_io_lib/io_lib/stdio_hack.h
diff --git a/...ibs/staden_io_lib-1.11.6/io_lib/strings.c → src/clibs/staden_io_lib/io_lib/strings.c b/...ibs/staden_io_lib-1.11.6/io_lib/strings.c → src/clibs/staden_io_lib/io_lib/strings.c
diff --git a/.../staden_io_lib-1.11.6/io_lib/tar_format.h → src/clibs/staden_io_lib/io_lib/tar_format.h b/.../staden_io_lib-1.11.6/io_lib/tar_format.h → src/clibs/staden_io_lib/io_lib/tar_format.h
diff --git a/...s/staden_io_lib-1.11.6/io_lib/traceType.c → src/clibs/staden_io_lib/io_lib/traceType.c b/...s/staden_io_lib-1.11.6/io_lib/traceType.c → src/clibs/staden_io_lib/io_lib/traceType.c
diff --git a/...s/staden_io_lib-1.11.6/io_lib/traceType.h → src/clibs/staden_io_lib/io_lib/traceType.h b/...s/staden_io_lib-1.11.6/io_lib/traceType.h → src/clibs/staden_io_lib/io_lib/traceType.h
diff --git a/...s/staden_io_lib-1.11.6/io_lib/translate.c → src/clibs/staden_io_lib/io_lib/translate.c b/...s/staden_io_lib-1.11.6/io_lib/translate.c → src/clibs/staden_io_lib/io_lib/translate.c
diff --git a/...s/staden_io_lib-1.11.6/io_lib/translate.h → src/clibs/staden_io_lib/io_lib/translate.h b/...s/staden_io_lib-1.11.6/io_lib/translate.h → src/clibs/staden_io_lib/io_lib/translate.h
diff --git a/src/clibs/staden_io_lib-1.11.6/io_lib/vlen.c → src/clibs/staden_io_lib/io_lib/vlen.c b/src/clibs/staden_io_lib-1.11.6/io_lib/vlen.c → src/clibs/staden_io_lib/io_lib/vlen.c
diff --git a/src/clibs/staden_io_lib-1.11.6/io_lib/vlen.h → src/clibs/staden_io_lib/io_lib/vlen.h b/src/clibs/staden_io_lib-1.11.6/io_lib/vlen.h → src/clibs/staden_io_lib/io_lib/vlen.h
diff --git a/...s/staden_io_lib-1.11.6/io_lib/write_scf.c → src/clibs/staden_io_lib/io_lib/write_scf.c b/...s/staden_io_lib-1.11.6/io_lib/write_scf.c → src/clibs/staden_io_lib/io_lib/write_scf.c
diff --git a/...libs/staden_io_lib-1.11.6/io_lib/xalloc.c → src/clibs/staden_io_lib/io_lib/xalloc.c b/...libs/staden_io_lib-1.11.6/io_lib/xalloc.c → src/clibs/staden_io_lib/io_lib/xalloc.c
diff --git a/...libs/staden_io_lib-1.11.6/io_lib/xalloc.h → src/clibs/staden_io_lib/io_lib/xalloc.h b/...libs/staden_io_lib-1.11.6/io_lib/xalloc.h → src/clibs/staden_io_lib/io_lib/xalloc.h
diff --git a/src/clibs/staden_io_lib-1.11.6/io_lib/ztr.c → src/clibs/staden_io_lib/io_lib/ztr.c b/src/clibs/staden_io_lib-1.11.6/io_lib/ztr.c → src/clibs/staden_io_lib/io_lib/ztr.c
diff --git a/src/clibs/staden_io_lib-1.11.6/io_lib/ztr.h → src/clibs/staden_io_lib/io_lib/ztr.h b/src/clibs/staden_io_lib-1.11.6/io_lib/ztr.h → src/clibs/staden_io_lib/io_lib/ztr.h
diff --git a/...aden_io_lib-1.11.6/io_lib/ztr_translate.c → ...libs/staden_io_lib/io_lib/ztr_translate.c b/...aden_io_lib-1.11.6/io_lib/ztr_translate.c → ...libs/staden_io_lib/io_lib/ztr_translate.c