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Explicitly check CHROM field is Int #23

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biona001 opened this issue Jun 27, 2024 · 0 comments · Fixed by #24
Closed

Explicitly check CHROM field is Int #23

biona001 opened this issue Jun 27, 2024 · 0 comments · Fixed by #24

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@biona001
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According to the docs

--chr input: This MUST be an integer and it must match the CHROM field in your VCF file. Thus, if your VCF file has CHROM field like chr1, CHR1, or CHROM1 etc, each record must be renamed into 1

However currently there's no check of this right now.
@biona001 biona001 mentioned this issue Jun 27, 2024
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Chech chr biona001/GhostKnockoffGWAS
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@biona001