Cannot install FASTA36

[bheimbu]

Hello,

I'm having problems to install fDOG. See below for error message

$ fdog.setup -d $HOME/bin/fdog/
*** Creating local NCBI taxonomy database...
*** Installing dependencies...
=> Dependencies in /home/uni08/bheimbu/.local/lib/python3.9/site-packages/fdog/data/dependencies.txt already installed!
=> FASTA36 (https://github.com/wrpearson/fasta36)
Downloading https://github.com/wrpearson/fasta36/archive/refs/tags/v36.3.8h_04-May-2020.tar.gz
...-126156800%, 1 MB, 7856 KB/s, 0 seconds passed ... done!
Compiling fasta36. Please wait...
gcc -g -O -msse2  -DSHOW_HELP -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=8 -DTHR_EXIT=pthread_exit  -DM10_CONS  -D_REENTRANT -DHAS_INTTYPES -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DSAMP_STATS -DPGM_DOC -DUSE_MMAP  -D_LARGEFILE64_SOURCE  -DBIG_LIB64 -DCOMP_THR -DCOMP_MLIB -c comp_lib9.c -o comp_mthr9.o
In file included from comp_lib9.c:43:0:
/opt/sw/rev/21.12/haswell/oneapi-2022.0.0/intel-20.0.4-bn2ws2/include/limits.h:37:54: Fehler: missing binary operator before token "("
     defined(__has_include_next) && __has_include_next(<limits.h>)
                                                      ^
comp_lib9.c: In Funktion »main«:
comp_lib9.c:913:17: Fehler: »FLT_MAX« nicht deklariert (erste Benutzung in dieser Funktion)
     zbestcut = -FLT_MAX;
                 ^
comp_lib9.c:913:17: Anmerkung: jeder nicht deklarierte Bezeichner wird nur einmal für jede Funktion, in der er vorkommt, gemeldet
comp_lib9.c: In Funktion »init_beststats«:
comp_lib9.c:3046:25: Fehler: »FLT_MIN« nicht deklariert (erste Benutzung in dieser Funktion)
   (*best)[0].rst.escore=FLT_MIN; /* for E()-values, lower is best */
                         ^
comp_lib9.c:3047:21: Fehler: »FLT_MAX« nicht deklariert (erste Benutzung in dieser Funktion)
   (*best)[0].zscore=FLT_MAX; /* for Z-scores, bigger is best */
                     ^
make: *** [comp_mthr9.o] Fehler 1
ERROR: Cannot install FASTA36!

before that I have done...

$ fas.setup -t ./ --check
Annotation tools can be found at /usr/users/bheimbu/annotation_tools. FAS is ready to run!
You should test fas.doAnno with this command:
==> fas.doAnno -i test_annofas.fa -o testFas_output <==

Any help is highly appreciated,

Bastian

[bheimbu]

Found the solution by myself, had to module load gcc. The 'base' compiler of our HPC is outdated.

Cheers Bastian