Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Relations in pubtator not showing #18

Closed
shamikbose opened this issue May 18, 2022 · 1 comment
Closed

Relations in pubtator not showing #18

shamikbose opened this issue May 18, 2022 · 1 comment

Comments

@shamikbose
Copy link

shamikbose commented May 18, 2022

I'm trying to read the BioRED file from here: https://ftp.ncbi.nlm.nih.gov/pub/lu/BioRED/
As you will see, it has pubtator formats. The annotations are read in propely, but when I try to read the relations, it doesn't provide any output
The relations are written as follows:

14510914	Association	D050033	D007454	No
14510914	Positive_Correlation	p|DEL|439_443|	C564766	Novel
14510914	Positive_Correlation	p|DEL|439_443|	D003409	Novel
14510914	Association	C564766	D007454	No

Is this something bioc.pubtator supports?

@yfpeng
Copy link
Collaborator

yfpeng commented Oct 29, 2022

Thanks. Please try v2.0.post5

@yfpeng yfpeng closed this as completed Oct 29, 2022
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

2 participants