BIT-VS-IT
Popular repositories
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MAESTRO
MAESTRO PublicForked from liulab-dfci/MAESTRO
Single-cell Transcriptome and Regulome Analysis Pipeline
C 1
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TAR-scRNA-seq
TAR-scRNA-seq PublicForked from fw262/TAR-scRNA-seq
scRNA-seq analysis beyond gene annotations using transcriptionally active regions (TARs) generated from sequence alignment data
R 1
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scg_lib_structs
scg_lib_structs PublicForked from Teichlab/scg_lib_structs
Collections of library structure and sequence of popular single cell genomic methods
HTML
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scATAC-pro
scATAC-pro PublicForked from tanlabcode/scATAC-pro
A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data
R
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chromothripsis-gene-amp-cancer
chromothripsis-gene-amp-cancer PublicForked from sfbrunner/chromothripsis-gene-amp-cancer
Code associated with publication "Chromothripsis drives the evolution of gene amplification in cancer"
Python
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Alleloscope
Alleloscope PublicForked from seasoncloud/Alleloscope
Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separately or in combination). Allele-specific estimation allows …
R
Repositories
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- ChimeraTE Public Forked from OliveiraDS-hub/ChimeraTE
A pipeline to detect chimeric transcripts derived from genes and transposable elements.
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- PhyloVelo Public Forked from kunwang34/PhyloVelo
PhyloVelo, Phylogeny-based transcriptomic velocity of single cells
- IPAFinder Public Forked from ZhaozzReal/IPAFinder
Systematic analyses of intronic polyadenylation from standard RNAseq data
- single-cell-papers-with-code Public Forked from genecell/single-cell-papers-with-code
Papers with code for single cell related papers
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