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  1. MAESTRO MAESTRO Public

    Forked from liulab-dfci/MAESTRO

    Single-cell Transcriptome and Regulome Analysis Pipeline

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  2. TAR-scRNA-seq TAR-scRNA-seq Public

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    scRNA-seq analysis beyond gene annotations using transcriptionally active regions (TARs) generated from sequence alignment data

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  3. scg_lib_structs scg_lib_structs Public

    Forked from Teichlab/scg_lib_structs

    Collections of library structure and sequence of popular single cell genomic methods

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  4. scATAC-pro scATAC-pro Public

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    A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data

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  5. chromothripsis-gene-amp-cancer chromothripsis-gene-amp-cancer Public

    Forked from sfbrunner/chromothripsis-gene-amp-cancer

    Code associated with publication "Chromothripsis drives the evolution of gene amplification in cancer"

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  6. Alleloscope Alleloscope Public

    Forked from seasoncloud/Alleloscope

    Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separately or in combination). Allele-specific estimation allows …

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