A simple script to quickly parse BibTex/RIS strings/files. Made to quickly grab metadata from scientific papers in a useful text format.
$ ./getcitation.py [FILENAME [bibtex|ris]]Supply the filename to retrieve a plaintext citation for a .bib or .ris file. If a .txt file is supplied, the citation format of the contents will be automatically detected, or may be explicitly supplied as an additional argument.
Alternatively, supplying no filename parses contents in the clipboard, automatically detecting the citation format.
Outputted plaintext citations are in the format:
author(s)(year).(primary) title.journal,doi
Any missing data are substituted with the placeholder "No [datum_label]," e.g. "No author."
Note that this does not aim to conform to any popular standardized format (APA 7, Chicago, etc.) but instead acts as a way to quickly, succinctly describe the contents of a paper (e.g., for personal reference management.)
The paper Teaching Computational Modeling in the Data Science Era, for example, can be cited in pure BibTex (.bib) form via:
$ ./getcitation.py bib.bibwhich outputs
Philippe J. Giabbanelli and Vijay K. Mago (2016). Teaching Computational Modeling in the Data Science Era. Procedia Computer Science, https://doi.org/10.1016/j.procs.2016.05.517
A citation formatted as a .txt file containing an RIS citation would be parsed via:
$ ./getcitation.py biofilms.txt [ris]where the [ris] format argument is optional. When parsed for the paper Strategies for combating bacterial biofilm infections, the output is the following:
Hong Wu, Claus Moser, Heng-Zhuang Wang, Niels Høiby, Zhi-Jun Song (2015). Strategies for combating bacterial biofilm infections. International Journal of Oral Science, 10.1038/ijos.2014.65
- Uses BibtexParser for parsing BibTex (
.bib) files - Uses rispy for parsing
.risfiles - Uses pyperclip for clipboard access