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ggbr_to_rggb.py
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ggbr_to_rggb.py
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from astropy.io import fits
import sys
import glob
import getopt
import os
fits_fn = sys.argv[1]
pattern = 'GGBR'
def ggbr_to_rggb_reorder(data):
data1 = data.copy()
for y in range(len(data)):
for x in range(len(data[0])):
if y % 2 == 0:
if x % 2 == 0:
v = data[y + 1][x + 1] # R
else:
v = data[y][x] # G2
else:
if x % 2 == 0:
v = data[y - 1][x] # G1
else:
v = data[y][x - 1] # B
data1[y][x] = v
return data1
def process(file, workdir, prefix):
base = os.path.basename(file)
dirname = os.path.dirname(file)
pattern = 'RGGB'
hdul = fits.open(file)
hdul[0].header['BAYERPAT'] = pattern
hdul[0].header['XBAYROFF'] = 0
hdul[0].header['YBAYROFF'] = 0
hdul[0].header.comments['BAYERPAT'] = 'Bayer color pattern'
hdul[0].header.comments['XBAYROFF'] = 'X offset of Bayer array'
hdul[0].header.comments['YBAYROFF'] = 'Y offset of Bayer array'
newdata = ggbr_to_rggb_reorder(hdul[0].data)
hdul[0].data = newdata
if workdir is None:
workdir = dirname
new_fn = os.path.join(workdir, (prefix + '_' + base))
hdul.writeto(new_fn)
print(new_fn)
def usage():
print('Usage: %s [options] [fits_files]')
print('Makes a GGBR bayer pattern into RGGB.')
print('OPTIONS')
print(' -h, --help This help screen')
print(' -w dir, --workdir dir Directory to save files, defaults to location of input file')
print(' -p prefix, --prefix prefix Prefix of new file')
print()
def main():
workdir = None
prefix = 'RGGB'
try:
opts, args = getopt.getopt(sys.argv[1:], 'hw:p:', ['help', 'workdir=', 'prefix='])
except getopt.GetoptError as err:
print(err)
usage()
sys.exit(2)
for o, a in opts:
if o in ('-h', '--help'):
usage()
sys.exit(0)
elif o in ('-w', '--workdir'):
workdir = a
elif o in ('-p', '--prefix'):
prefix = a
if len(args) == 0:
print('ERROR: No fits files specified.')
sys.exit(3)
print({'prefix': prefix, 'args': args, 'workdir': workdir})
files = []
for f in args:
files.extend(glob.glob(f))
for f in files:
process(f, workdir, prefix)
print('Done.')
if __name__ == '__main__':
main()