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Bug: ReadAffy for a batch of CEL files fails completely if one of the CEL files is corrupt #3

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kalugny opened this issue Jul 25, 2018 · 0 comments
Open

Bug: ReadAffy for a batch of CEL files fails completely if one of the CEL files is corrupt #3

kalugny opened this issue Jul 25, 2018 · 0 comments

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@kalugny
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kalugny commented Jul 25, 2018

Hi,
Thank you for your work on affyio.

I found a bug in which one corrupt file in a long list of samples stops the processing of the whole batch.
This is because read_abatch throws an error inside the loop if the file is corrupted.

Skipping it with a (stern) warning would make more sense, or at least should be an option for people using it in R.

Thanks!
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