create-vignette.Rout

R version 4.2.2 Patched (2022-11-10 r83330) -- "Innocent and Trusting"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

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> library(rmarkdown)
> library(reshape2)
> (function(){
+   setwd("vignettes")
+ 
+   render("pedigree_partitioning.Rmd", output_format = "html_document")
+   render("pedmod.Rmd", output_format = "html_document")
+   render("pedmod.Rmd", output_format = github_document(
+     pandoc_args = "--webtex=https://render.githubusercontent.com/render/math?math="),
+     output_file = "README.md")
+   file.copy("README.md", file.path("..", "README.md"), overwrite = TRUE)
+   unlink("README.md")
+   unlink("README.html")
+ 
+   fs <- list.files(file.path("man", "figures"))
+   for(f in fs)
+     file.copy(file.path("man", "figures", f),
+               file.path("..", "man", "figures", f), overwrite = TRUE)
+   unlink("man", recursive = TRUE)
+ })()


processing file: pedigree_partitioning.Rmd

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label: pedigree_example

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Attaching package: 'igraph'

The following objects are masked from 'package:stats':

    decompose, spectrum

The following object is masked from 'package:base':

    union


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Attaching package: 'pedmod'

The following object is masked from 'package:igraph':

    biconnected_components


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output file: pedigree_partitioning.knit.md

/usr/bin/pandoc +RTS -K512m -RTS pedigree_partitioning.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output pedigree_partitioning.html --lua-filter /home/boennecd/R/x86_64-pc-linux-gnu-library/4.2/rmarkdown/rmarkdown/lua/pagebreak.lua --lua-filter /home/boennecd/R/x86_64-pc-linux-gnu-library/4.2/rmarkdown/rmarkdown/lua/latex-div.lua --self-contained --variable bs3=TRUE --section-divs --template /home/boennecd/R/x86_64-pc-linux-gnu-library/4.2/rmarkdown/rmd/h/default.html --no-highlight --variable highlightjs=1 --variable theme=bootstrap --mathjax --variable 'mathjax-url=https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML' --include-in-header /tmp/RtmptteD6x/rmarkdown-str7e46462c8528.html --filter /usr/bin/pandoc-citeproc 

Output created: pedigree_partitioning.html


processing file: pedmod.Rmd

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label: sim_study_simple
(Intercept)  Continuous      Binary             
     -3.226       1.039       2.158       1.243 
(Intercept)  Continuous      Binary             
     -3.211       1.034       2.148       1.230 
attr(,"variance proportions")
Residual          
  0.2262   0.7738 
         (Intercept) Continuous Binary       
Estimate     -3.2259     1.0385 2.1585 1.2426
SE            0.4296     0.1429 0.2982 0.3444
Time          9.1,          9.9. Max ll:   -1574.0667,   -1574.0658

(Intercept)  Continuous      Binary             
     -3.291       1.107       2.137       1.305 
(Intercept)  Continuous      Binary             
     -3.296       1.109       2.141       1.309 
attr(,"variance proportions")
Residual          
  0.2127   0.7873 
         (Intercept) Continuous Binary      
Estimate     -3.2908     1.1074 2.1374 1.305
SE            0.4409     0.1518 0.2977 0.340
Time          9.7,         13.4. Max ll:   -1569.6613,   -1569.6609

(Intercept)  Continuous      Binary             
    -2.8068      0.9498      1.9047      1.0250 
(Intercept)  Continuous      Binary             
     -2.817       0.953       1.912       1.034 
attr(,"variance proportions")
Residual          
  0.2623   0.7377 
         (Intercept) Continuous Binary       
Estimate     -2.8068     0.9498 1.9047 1.0250
SE            0.3244     0.1176 0.2338 0.3118
Time         11.9,         11.1. Max ll:   -1618.0764,   -1618.0755

(Intercept)  Continuous      Binary             
    -2.7593      0.9823      1.8346      0.9390 
(Intercept)  Continuous      Binary             
    -2.7689      0.9857      1.8411      0.9488 
attr(,"variance proportions")
Residual          
  0.2791   0.7209 
         (Intercept) Continuous Binary       
Estimate      -2.759     0.9823  1.835 0.9390
SE             0.288     0.1102  0.203 0.2901
Time          4.0,          9.8. Max ll:   -1616.7848,   -1616.7831

(Intercept)  Continuous      Binary             
     -3.137       1.134       2.059       1.165 
(Intercept)  Continuous      Binary             
     -3.134       1.134       2.058       1.163 
attr(,"variance proportions")
Residual          
  0.2381   0.7619 
         (Intercept) Continuous Binary       
Estimate     -3.1367     1.1344 2.0591 1.1649
SE            0.3833     0.1431 0.2628 0.3221
Time          4.9,          9.2. Max ll:   -1583.7124,   -1583.7126

(Intercept)  Continuous      Binary             
     -3.298       1.041       2.182       1.360 
(Intercept)  Continuous      Binary             
     -3.267       1.031       2.162       1.336 
attr(,"variance proportions")
Residual          
  0.2082   0.7918 
         (Intercept) Continuous Binary       
Estimate     -3.2985     1.0406 2.1824 1.3598
SE            0.4346     0.1434 0.3007 0.3324
Time         15.8,         11.4. Max ll:   -1615.3256,   -1615.3264

(Intercept)  Continuous      Binary             
    -2.5149      0.7904      1.5945      0.4589 
(Intercept)  Continuous      Binary             
    -2.5151      0.7904      1.5947      0.4596 
attr(,"variance proportions")
Residual          
  0.3871   0.6129 
         (Intercept) Continuous Binary       
Estimate     -2.5149    0.79038  1.595 0.4589
SE            0.2109    0.07513  0.149 0.2676
Time          8.2,         12.4. Max ll:   -1566.8999,   -1566.8999

(Intercept)  Continuous      Binary             
     -3.323       1.096       2.071       1.469 
(Intercept)  Continuous      Binary             
     -3.314       1.094       2.065       1.462 
attr(,"variance proportions")
Residual          
  0.1882   0.8118 
         (Intercept) Continuous Binary       
Estimate     -3.3225      1.096 2.0710 1.4689
SE            0.4919      0.170 0.3172 0.3659
Time          6.8,         10.8. Max ll:   -1590.2368,   -1590.2370

(Intercept)  Continuous      Binary             
     -3.735       1.259       2.476       1.649 
(Intercept)  Continuous      Binary             
     -3.711       1.251       2.460       1.634 
attr(,"variance proportions")
Residual          
  0.1633   0.8367 
         (Intercept) Continuous Binary       
Estimate     -3.7348      1.259 2.4757 1.6491
SE            0.6233      0.217 0.4247 0.3991
Time          7.1,         14.2. Max ll:   -1583.5849,   -1583.5846

(Intercept)  Continuous      Binary             
    -2.8240      1.0329      1.8463      0.9501 
(Intercept)  Continuous      Binary             
    -2.8285      1.0345      1.8492      0.9545 
attr(,"variance proportions")
Residual          
   0.278    0.722 
         (Intercept) Continuous Binary       
Estimate     -2.8240     1.0329 1.8463 0.9501
SE            0.3005     0.1162 0.2079 0.2941
Time          6.5,         11.5. Max ll:   -1573.0912,   -1573.0908

(Intercept)  Continuous      Binary             
     -3.464       1.114       2.301       1.391 
(Intercept)  Continuous      Binary             
     -3.454       1.112       2.295       1.384 
attr(,"variance proportions")
Residual          
  0.2004   0.7996 
         (Intercept) Continuous Binary      
Estimate     -3.4640     1.1145 2.3015 1.391
SE            0.4575     0.1541 0.3126 0.331
Time          5.2,         10.6. Max ll:   -1549.6445,   -1549.6443

(Intercept)  Continuous      Binary             
     -3.275       1.095       2.262       1.258 
(Intercept)  Continuous      Binary             
     -3.272       1.094       2.260       1.256 
attr(,"variance proportions")
Residual          
  0.2216   0.7784 
         (Intercept) Continuous Binary       
Estimate     -3.2749     1.0953 2.2617 1.2582
SE            0.4301     0.1498 0.3094 0.3394
Time          6.3,          6.8. Max ll:   -1580.3836,   -1580.3836

(Intercept)  Continuous      Binary             
    -2.7584      0.9734      1.8345      0.8728 
(Intercept)  Continuous      Binary             
    -2.7552      0.9723      1.8323      0.8696 
attr(,"variance proportions")
Residual          
  0.2953   0.7047 
         (Intercept) Continuous Binary       
Estimate     -2.7584     0.9734 1.8345 0.8728
SE            0.2911     0.1097 0.2066 0.2984
Time          5.3,          9.4. Max ll:   -1598.1032,   -1598.1023

(Intercept)  Continuous      Binary             
     -3.019       1.002       2.126       1.173 
(Intercept)  Continuous      Binary             
     -3.036       1.008       2.138       1.187 
attr(,"variance proportions")
Residual          
  0.2338   0.7662 
         (Intercept) Continuous Binary       
Estimate     -3.0191     1.0020 2.1265 1.1728
SE            0.3602     0.1263 0.2644 0.3102
Time          6.1,          7.8. Max ll:   -1647.5906,   -1647.5893

(Intercept)  Continuous      Binary             
     -3.716       1.274       2.407       1.578 
(Intercept)  Continuous      Binary             
     -3.723       1.276       2.411       1.582 
attr(,"variance proportions")
Residual          
  0.1705   0.8295 
         (Intercept) Continuous Binary       
Estimate     -3.7161     1.2741 2.4066 1.5781
SE            0.5708     0.2002 0.3796 0.3728
Time          3.9,         12.2. Max ll:   -1526.4827,   -1526.4814

(Intercept)  Continuous      Binary             
     -2.934       1.055       1.911       1.126 
(Intercept)  Continuous      Binary             
     -2.924       1.052       1.903       1.119 
attr(,"variance proportions")
Residual          
  0.2461   0.7539 
         (Intercept) Continuous Binary       
Estimate     -2.9341     1.0546 1.9110 1.1258
SE            0.3361     0.1269 0.2319 0.3028
Time         14.8,         10.5. Max ll:   -1613.5392,   -1613.5391

(Intercept)  Continuous      Binary             
    -2.8035      0.9292      1.9385      1.0237 
(Intercept)  Continuous      Binary             
    -2.8070      0.9303      1.9408      1.0271 
attr(,"variance proportions")
Residual          
  0.2637   0.7363 
         (Intercept) Continuous Binary       
Estimate     -2.8035     0.9292 1.9385 1.0237
SE            0.3003     0.1066 0.2215 0.2858
Time          8.4,          5.5. Max ll:   -1653.6128,   -1653.6129

(Intercept)  Continuous      Binary             
    -2.8805      0.9265      1.8133      1.1205 
(Intercept)  Continuous      Binary             
     -2.899       0.932       1.825       1.137 
attr(,"variance proportions")
Residual          
  0.2428   0.7572 
         (Intercept) Continuous Binary       
Estimate      -2.880     0.9265 1.8133 1.1205
SE             0.352     0.1197 0.2384 0.3268
Time          9.2,         11.7. Max ll:   -1625.5476,   -1625.5452

(Intercept)  Continuous      Binary             
     -2.858       1.001       1.852       1.009 
(Intercept)  Continuous      Binary             
     -2.860       1.001       1.853       1.011 
attr(,"variance proportions")
Residual          
  0.2669   0.7331 
         (Intercept) Continuous Binary       
Estimate     -2.8579      1.001 1.8518 1.0088
SE            0.3158      0.116 0.2177 0.2982
Time          7.5,          5.4. Max ll:   -1608.3817,   -1608.3804

(Intercept)  Continuous      Binary             
    -2.9567      0.9662      2.0162      1.0261 
(Intercept)  Continuous      Binary             
    -2.9515      0.9645      2.0127      1.0212 
attr(,"variance proportions")
Residual          
  0.2648   0.7352 
         (Intercept) Continuous Binary       
Estimate     -2.9567     0.9662 2.0162 1.0261
SE            0.3309     0.1150 0.2371 0.3053
Time          6.7,         11.2. Max ll:   -1589.7108,   -1589.7108

(Intercept)  Continuous      Binary             
     -3.383       1.144       2.231       1.388 
(Intercept)  Continuous      Binary             
     -3.378       1.142       2.227       1.384 
attr(,"variance proportions")
Residual          
  0.2003   0.7997 
         (Intercept) Continuous Binary       
Estimate     -3.3835     1.1440 2.2313 1.3884
SE            0.4847     0.1705 0.3289 0.3585
Time          5.2,          7.3. Max ll:   -1580.1220,   -1580.1218

(Intercept)  Continuous      Binary             
    -2.7232      0.9308      1.7717      0.8454 
(Intercept)  Continuous      Binary             
    -2.7427      0.9376      1.7850      0.8649 
attr(,"variance proportions")
Residual          
  0.2963   0.7037 
         (Intercept) Continuous Binary       
Estimate     -2.7232     0.9308  1.772 0.8454
SE            0.2686     0.0975  0.190 0.2750
Time          9.0,          8.6. Max ll:   -1595.5390,   -1595.5364

(Intercept)  Continuous      Binary             
     -3.530       1.139       2.372       1.439 
(Intercept)  Continuous      Binary             
     -3.516       1.135       2.361       1.428 
attr(,"variance proportions")
Residual          
  0.1933   0.8067 
         (Intercept) Continuous Binary       
Estimate     -3.5301     1.1390 2.3724 1.4392
SE            0.4895     0.1651 0.3382 0.3464
Time          5.6,          7.0. Max ll:   -1574.6020,   -1574.6036

(Intercept)  Continuous      Binary             
    -2.6764      0.9196      1.7183      0.7708 
(Intercept)  Continuous      Binary             
    -2.6848      0.9225      1.7240      0.7799 
attr(,"variance proportions")
Residual          
  0.3143   0.6857 
         (Intercept) Continuous Binary       
Estimate     -2.6764    0.91956 1.7183 0.7708
SE            0.2625    0.09736 0.1824 0.2834
Time          3.9,          9.7. Max ll:   -1581.5043,   -1581.5037

(Intercept)  Continuous      Binary             
     -3.308       1.004       2.247       1.353 
(Intercept)  Continuous      Binary             
     -3.307       1.003       2.247       1.352 
attr(,"variance proportions")
Residual          
  0.2056   0.7944 
         (Intercept) Continuous Binary       
Estimate     -3.3084     1.0040 2.2472 1.3531
SE            0.4484     0.1427 0.3136 0.3416
Time          5.2,         10.8. Max ll:   -1591.3680,   -1591.3679

(Intercept)  Continuous      Binary             
     -3.984       1.288       2.559       1.984 
(Intercept)  Continuous      Binary             
     -3.981       1.287       2.557       1.983 
attr(,"variance proportions")
Residual          
   0.121    0.879 
         (Intercept) Continuous Binary       
Estimate     -3.9838     1.2875 2.5588 1.9836
SE            0.7132     0.2381 0.4676 0.4102
Time         24.5,          7.8. Max ll:   -1641.9077,   -1641.9075

(Intercept)  Continuous      Binary             
    -2.8043      0.9353      1.8464      0.9950 
(Intercept)  Continuous      Binary             
     -2.815       0.938       1.854       1.005 
attr(,"variance proportions")
Residual          
   0.268    0.732 
         (Intercept) Continuous Binary      
Estimate     -2.8043     0.9353 1.8464 0.995
SE            0.2997     0.1059 0.2109 0.291
Time          5.5,         12.5. Max ll:   -1610.3250,   -1610.3232

(Intercept)  Continuous      Binary             
    -2.7686      0.9774      1.9829      1.0085 
(Intercept)  Continuous      Binary             
    -2.7613      0.9749      1.9777      1.0015 
attr(,"variance proportions")
Residual          
  0.2686   0.7314 
         (Intercept) Continuous Binary       
Estimate     -2.7686     0.9774 1.9829 1.0085
SE            0.2968     0.1115 0.2207 0.2887
Time          4.7,          7.1. Max ll:   -1699.3578,   -1699.3561

(Intercept)  Continuous      Binary             
    -2.7637      0.9000      1.9396      0.8837 
(Intercept)  Continuous      Binary             
    -2.7726      0.9028      1.9460      0.8924 
attr(,"variance proportions")
Residual          
  0.2906   0.7094 
         (Intercept) Continuous Binary       
Estimate     -2.7637    0.90003 1.9396 0.8837
SE            0.2733    0.09482 0.2019 0.2762
Time          4.9,          9.5. Max ll:   -1615.5320,   -1615.5305

(Intercept)  Continuous      Binary             
     -3.190       1.169       2.173       1.370 
(Intercept)  Continuous      Binary             
     -3.179       1.165       2.164       1.362 
attr(,"variance proportions")
Residual          
  0.2039   0.7961 
         (Intercept) Continuous Binary       
Estimate     -3.1904     1.1688 2.1725 1.3699
SE            0.4163     0.1571 0.2963 0.3273
Time          6.0,         13.6. Max ll:   -1608.8413,   -1608.8405

(Intercept)  Continuous      Binary             
    -2.6756      0.8857      1.8309      0.6906 
(Intercept)  Continuous      Binary             
    -2.6788      0.8868      1.8332      0.6940 
attr(,"variance proportions")
Residual          
  0.3331   0.6669 
         (Intercept) Continuous Binary       
Estimate     -2.6756    0.88574 1.8309 0.6906
SE            0.2425    0.08814 0.1804 0.2639
Time          5.2,          5.4. Max ll:   -1577.1618,   -1577.1616

(Intercept)  Continuous      Binary             
    -2.9307      0.9919      1.9318      1.1919 
(Intercept)  Continuous      Binary             
    -2.9386      0.9945      1.9368      1.1983 
attr(,"variance proportions")
Residual          
  0.2318   0.7682 
         (Intercept) Continuous Binary       
Estimate     -2.9307     0.9919 1.9318 1.1919
SE            0.3668     0.1307 0.2538 0.3237
Time          4.9,          5.8. Max ll:   -1650.7065,   -1650.7056

(Intercept)  Continuous      Binary             
    -2.5901      0.8567      1.6904      0.7512 
(Intercept)  Continuous      Binary             
    -2.5874      0.8558      1.6887      0.7479 
attr(,"variance proportions")
Residual          
  0.3213   0.6787 
         (Intercept) Continuous Binary       
Estimate     -2.5901    0.85672 1.6904 0.7512
SE            0.2463    0.08775 0.1763 0.2724
Time         10.1,          5.6. Max ll:   -1611.1538,   -1611.1544

(Intercept)  Continuous      Binary             
     -3.882       1.309       2.673       1.666 
(Intercept)  Continuous      Binary             
     -3.873       1.306       2.667       1.661 
attr(,"variance proportions")
Residual          
  0.1596   0.8404 
         (Intercept) Continuous Binary       
Estimate     -3.8815     1.3092 2.6728 1.6661
SE            0.6723     0.2339 0.4699 0.4158
Time         10.2,          6.9. Max ll:   -1543.1585,   -1543.1577

(Intercept)  Continuous      Binary             
     -3.302       1.002       2.224       1.390 
(Intercept)  Continuous      Binary             
    -3.2826      0.9965      2.2103      1.3753 
attr(,"variance proportions")
Residual          
  0.2018   0.7982 
         (Intercept) Continuous Binary       
Estimate     -3.3023     1.0024 2.2238 1.3899
SE            0.4569     0.1448 0.3169 0.3455
Time         10.5,         10.8. Max ll:   -1643.4977,   -1643.4958

(Intercept)  Continuous      Binary             
    -2.8096      0.8574      1.9157      0.7994 
(Intercept)  Continuous      Binary             
    -2.8133      0.8585      1.9181      0.8032 
attr(,"variance proportions")
Residual          
  0.3093   0.6907 
         (Intercept) Continuous Binary       
Estimate     -2.8096    0.85744 1.9157 0.7994
SE            0.2738    0.09143 0.1983 0.2800
Time         10.9,          9.3. Max ll:   -1574.7349,   -1574.7348

(Intercept)  Continuous      Binary             
    -2.6379      0.8634      1.7388      0.6046 
(Intercept)  Continuous      Binary             
    -2.6388      0.8637      1.7394      0.6058 
attr(,"variance proportions")
Residual          
   0.353    0.647 
         (Intercept) Continuous Binary       
Estimate     -2.6379    0.86345  1.739 0.6046
SE            0.2305    0.08599  0.166 0.2627
Time         11.6,         10.6. Max ll:   -1544.2522,   -1544.2522

(Intercept)  Continuous      Binary             
     -3.732       1.313       2.482       1.562 
(Intercept)  Continuous      Binary             
     -3.763       1.324       2.502       1.582 
attr(,"variance proportions")
Residual          
  0.1705   0.8295 
         (Intercept) Continuous Binary       
Estimate     -3.7322      1.313 2.4816 1.5617
SE            0.5843      0.213 0.3997 0.3793
Time          6.2,          6.9. Max ll:   -1517.1693,   -1517.1690

(Intercept)  Continuous      Binary             
    -2.7332      0.9528      1.8472      0.8795 
(Intercept)  Continuous      Binary             
    -2.7538      0.9595      1.8619      0.9001 
attr(,"variance proportions")
Residual          
   0.289    0.711 
         (Intercept) Continuous Binary       
Estimate     -2.7332     0.9528 1.8472 0.8795
SE            0.2773     0.1032 0.2035 0.2821
Time          5.0,          9.8. Max ll:   -1606.8309,   -1606.8306

(Intercept)  Continuous      Binary             
     -3.119       1.042       2.045       1.021 
(Intercept)  Continuous      Binary             
     -3.111       1.039       2.040       1.014 
attr(,"variance proportions")
Residual          
  0.2662   0.7338 
         (Intercept) Continuous Binary       
Estimate     -3.1189     1.0420 2.0451 1.0212
SE            0.3535     0.1238 0.2443 0.3049
Time          5.1,          9.0. Max ll:   -1530.2611,   -1530.2607

(Intercept)  Continuous      Binary             
    -2.7945      0.9446      1.8856      1.0420 
(Intercept)  Continuous      Binary             
     -2.795       0.945       1.886       1.043 
attr(,"variance proportions")
Residual          
  0.2606   0.7394 
         (Intercept) Continuous Binary       
Estimate     -2.7945     0.9446 1.8856 1.0420
SE            0.2984     0.1072 0.2135 0.2896
Time          9.4,          8.8. Max ll:   -1643.2979,   -1643.2979

(Intercept)  Continuous      Binary             
     -3.086       1.082       2.090       1.240 
(Intercept)  Continuous      Binary             
     -3.088       1.082       2.091       1.242 
attr(,"variance proportions")
Residual          
  0.2242   0.7758 
         (Intercept) Continuous Binary       
Estimate     -3.0857     1.0817 2.0899 1.2398
SE            0.3668     0.1354 0.2614 0.3034
Time          4.8,         10.9. Max ll:   -1637.9652,   -1637.9651

(Intercept)  Continuous      Binary             
     -2.962       1.050       1.794       1.221 
(Intercept)  Continuous      Binary             
     -2.959       1.049       1.792       1.218 
attr(,"variance proportions")
Residual          
  0.2283   0.7717 
         (Intercept) Continuous Binary       
Estimate     -2.9625     1.0502 1.7941 1.2209
SE            0.3816     0.1411 0.2455 0.3303
Time          9.5,         11.6. Max ll:   -1626.8064,   -1626.8063

(Intercept)  Continuous      Binary             
     -2.932       1.007       2.074       1.009 
(Intercept)  Continuous      Binary             
     -2.930       1.006       2.074       1.008 
attr(,"variance proportions")
Residual          
  0.2673   0.7327 
         (Intercept) Continuous Binary       
Estimate     -2.9317      1.007 2.0743 1.0091
SE            0.3139      0.114 0.2335 0.2877
Time          9.4,         11.6. Max ll:   -1624.0941,   -1624.0939

(Intercept)  Continuous      Binary             
    -2.8140      0.9323      1.9071      0.7796 
(Intercept)  Continuous      Binary             
    -2.8165      0.9331      1.9086      0.7823 
attr(,"variance proportions")
Residual          
  0.3138   0.6862 
         (Intercept) Continuous Binary       
Estimate     -2.8140     0.9323 1.9071 0.7796
SE            0.2664     0.0942 0.1916 0.2692
Time          5.7,          6.1. Max ll:   -1582.0835,   -1582.0837

(Intercept)  Continuous      Binary             
     -3.614       1.133       2.193       1.512 
(Intercept)  Continuous      Binary             
     -3.621       1.135       2.198       1.517 
attr(,"variance proportions")
Residual          
  0.1799   0.8201 
         (Intercept) Continuous Binary       
Estimate     -3.6136     1.1326 2.1933 1.5117
SE            0.5484     0.1766 0.3428 0.3712
Time          6.5,          6.8. Max ll:   -1512.1259,   -1512.1256

(Intercept)  Continuous      Binary             
    -2.8741      0.9475      1.9688      0.9152 
(Intercept)  Continuous      Binary             
    -2.8739      0.9474      1.9686      0.9149 
attr(,"variance proportions")
Residual          
   0.286    0.714 
         (Intercept) Continuous Binary       
Estimate     -2.8741     0.9475 1.9688 0.9152
SE            0.2992     0.1050 0.2144 0.2901
Time          9.4,          8.3. Max ll:   -1577.6617,   -1577.6617

(Intercept)  Continuous      Binary             
     -2.899       1.033       1.859       1.081 
(Intercept)  Continuous      Binary             
     -2.885       1.028       1.849       1.068 
attr(,"variance proportions")
Residual          
  0.2558   0.7442 
         (Intercept) Continuous Binary       
Estimate     -2.8988     1.0330 1.8589 1.0806
SE            0.3314     0.1237 0.2272 0.3046
Time          6.2,          7.7. Max ll:   -1630.5539,   -1630.5533

(Intercept)  Continuous      Binary             
     -3.205       1.057       2.110       1.293 
(Intercept)  Continuous      Binary             
     -3.200       1.056       2.107       1.290 
attr(,"variance proportions")
Residual          
  0.2159   0.7841 
         (Intercept) Continuous Binary       
Estimate     -3.2047     1.0571 2.1097 1.2932
SE            0.4204     0.1437 0.2902 0.3346
Time          5.2,          7.7. Max ll:   -1585.6072,   -1585.6071

(Intercept)  Continuous      Binary             
    -2.9610      0.9663      2.0263      1.1579 
(Intercept)  Continuous      Binary             
    -2.9718      0.9701      2.0319      1.1672 
attr(,"variance proportions")
Residual          
  0.2374   0.7626 
         (Intercept) Continuous Binary       
Estimate     -2.9610     0.9663 2.0263 1.1579
SE            0.3519     0.1206 0.2523 0.3122
Time          9.5,          8.9. Max ll:   -1643.4114,   -1643.4113


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label: sim_study_simple_w
(Intercept)      Binary                         
    -2.6481      3.6234      0.4520     -0.3163 
(Intercept)      Binary                         
     -2.649       3.625       0.455      -0.318 
attr(,"variance proportions")
Residual                   
  0.3027   0.4771   0.2202 
         (Intercept) Binary               
Estimate     -2.6481 3.6234 0.4520 -0.3163
SE            0.2373 0.3287 0.2636  0.3402
Time         12.6,         12.5. Max ll:   -2873.6880,   -2873.6880

(Intercept)      Binary                         
  -3.157781    4.405151    0.947818   -0.008592 
(Intercept)      Binary                         
   -3.14096     4.38187     0.93442    -0.02373 
attr(,"variance proportions")
Residual                   
  0.2211   0.5629   0.2159 
         (Intercept) Binary                 
Estimate      -3.158 4.4052 0.9478 -0.008592
SE             0.374 0.5282 0.3056  0.383326
Time         10.1,          5.6. Max ll:   -2779.6472,   -2779.6490

(Intercept)      Binary                         
    -2.8414      3.7621      0.2716      0.2028 
(Intercept)      Binary                         
    -2.8445      3.7662      0.2751      0.2048 
attr(,"variance proportions")
Residual                   
  0.2822   0.3715   0.3463 
         (Intercept) Binary              
Estimate     -2.8414 3.7621 0.2716 0.2028
SE            0.2705 0.3621 0.3149 0.2793
Time         11.3,         11.2. Max ll:   -2711.1825,   -2711.1823

(Intercept)      Binary                         
    -2.6060      3.5515      0.2742     -0.2248 
(Intercept)      Binary                         
    -2.6100      3.5565      0.2771     -0.2187 
attr(,"variance proportions")
Residual                   
  0.3202   0.4225   0.2573 
         (Intercept) Binary               
Estimate     -2.6060 3.5515 0.2742 -0.2248
SE            0.2173 0.3002 0.2659  0.3035
Time          9.9,         16.5. Max ll:   -2808.3757,   -2808.3754

(Intercept)      Binary                         
   -2.88444     4.02697     0.63506    -0.01787 
(Intercept)      Binary                         
   -2.88579     4.02873     0.63836    -0.02096 
attr(,"variance proportions")
Residual                   
  0.2582   0.4889   0.2529 
         (Intercept) Binary                
Estimate     -2.8844 4.0270 0.6351 -0.01787
SE            0.2954 0.4169 0.2873  0.33201
Time         22.0,         21.0. Max ll:   -2806.5809,   -2806.5807

(Intercept)      Binary                         
    -3.4243      4.5947      1.0178      0.3087 
(Intercept)      Binary                         
    -3.4331      4.6061      1.0251      0.3133 
attr(,"variance proportions")
Residual                   
  0.1940   0.5407   0.2654 
         (Intercept) Binary              
Estimate     -3.4243 4.5947 1.0178 0.3087
SE            0.4333 0.5856 0.3239 0.3606
Time          6.8,          6.9. Max ll:   -2709.5472,   -2709.5473

(Intercept)      Binary                         
   -2.92890     3.87255     0.63523     0.05416 
(Intercept)      Binary                         
   -2.93490     3.88068     0.64162     0.05832 
attr(,"variance proportions")
Residual                   
  0.2526   0.4797   0.2677 
         (Intercept) Binary               
Estimate     -2.9289 3.8725 0.6352 0.05416
SE            0.3004 0.4035 0.2926 0.32011
Time         28.8,         22.3. Max ll:   -2823.8290,   -2823.8293

(Intercept)      Binary                         
    -2.5750      3.3585      0.2541     -0.4181 
(Intercept)      Binary                         
    -2.5727      3.3552      0.2544     -0.4260 
attr(,"variance proportions")
Residual                   
  0.3398   0.4382   0.2219 
         (Intercept) Binary               
Estimate     -2.5750  3.359 0.2541 -0.4181
SE            0.2284  0.304 0.2815  0.3570
Time          7.4,         22.4. Max ll:   -2753.4426,   -2753.4433

(Intercept)      Binary                         
    -2.5207      3.4087      0.2612     -0.5451 
(Intercept)      Binary                         
    -2.5101      3.3956      0.2535     -0.5687 
attr(,"variance proportions")
Residual                   
  0.3503   0.4513   0.1984 
         (Intercept) Binary               
Estimate     -2.5207 3.4087 0.2612 -0.5451
SE            0.1989 0.2725 0.2522  0.3442
Time         15.4,          5.2. Max ll:   -2800.0163,   -2800.0188

(Intercept)      Binary                         
   -2.76572     3.66404     0.25859    -0.08975 
(Intercept)      Binary                         
   -2.76612     3.66467     0.25830    -0.08848 
attr(,"variance proportions")
Residual                   
  0.3115   0.4033   0.2851 
         (Intercept) Binary                
Estimate     -2.7657 3.6640 0.2586 -0.08975
SE            0.2474 0.3326 0.2921  0.30655
Time         19.0,         18.2. Max ll:   -2641.9372,   -2641.9372

(Intercept)      Binary                         
    -3.0253      4.1490      0.5587      0.3516 
(Intercept)      Binary                         
    -3.0274      4.1525      0.5625      0.3510 
attr(,"variance proportions")
Residual                   
  0.2395   0.4203   0.3402 
         (Intercept) Binary              
Estimate     -3.0253 4.1490 0.5587 0.3516
SE            0.3187 0.4416 0.3128 0.2896
Time         13.6,          8.0. Max ll:   -2767.1642,   -2767.1643

(Intercept)      Binary                         
   -2.72371     3.51815     0.24602    -0.08211 
(Intercept)      Binary                         
   -2.71728     3.50907     0.24167    -0.09279 
attr(,"variance proportions")
Residual                   
  0.3140   0.3998   0.2862 
         (Intercept) Binary                
Estimate     -2.7237 3.5181 0.2460 -0.08211
SE            0.2506 0.3282 0.3004  0.30630
Time         15.3,         12.9. Max ll:   -2719.1933,   -2719.1929

(Intercept)      Binary                         
   -2.98203     3.88358     0.65442    -0.01735 
(Intercept)      Binary                         
  -2.993169    3.898462    0.665999   -0.009816 
attr(,"variance proportions")
Residual                   
  0.2540   0.4944   0.2515 
         (Intercept) Binary                
Estimate     -2.9820 3.8836 0.6544 -0.01735
SE            0.3249 0.4289 0.3028  0.35886
Time         18.7,         20.5. Max ll:   -2716.4607,   -2716.4600

(Intercept)      Binary                         
    -2.7699      3.8082      0.6410     -0.3775 
(Intercept)      Binary                         
    -2.7685      3.8063      0.6389     -0.3771 
attr(,"variance proportions")
Residual                   
  0.2793   0.5291   0.1916 
         (Intercept) Binary               
Estimate     -2.7699 3.8082 0.6410 -0.3775
SE            0.2573 0.3571 0.2573  0.3727
Time         27.4,         22.4. Max ll:   -2842.7168,   -2842.7169

(Intercept)      Binary                         
    -2.6527      3.5657      0.2886     -0.2409 
(Intercept)      Binary                         
    -2.6601      3.5751      0.2956     -0.2308 
attr(,"variance proportions")
Residual                   
  0.3187   0.4283   0.2530 
         (Intercept) Binary               
Estimate     -2.6527 3.5657 0.2886 -0.2409
SE            0.2326 0.3179 0.2824  0.3152
Time         19.9,         17.1. Max ll:   -2737.0265,   -2737.0259

(Intercept)      Binary                         
    -2.9122      3.8533      0.6993     -0.1953 
(Intercept)      Binary                         
    -2.9177      3.8607      0.7049     -0.1915 
attr(,"variance proportions")
Residual                   
  0.2598   0.5257   0.2145 
         (Intercept) Binary               
Estimate      -2.912 3.8533 0.6993 -0.1953
SE             0.292 0.3909 0.2772  0.3571
Time         20.6,         20.9. Max ll:   -2789.6682,   -2789.6678

(Intercept)      Binary                         
    -2.4991      3.3502      0.1687     -0.4777 
(Intercept)      Binary                         
    -2.5001      3.3515      0.1724     -0.4812 
attr(,"variance proportions")
Residual                   
  0.3564   0.4234   0.2202 
         (Intercept) Binary               
Estimate     -2.4991  3.350 0.1687 -0.4777
SE            0.1976  0.271 0.2610  0.3292
Time         18.2,         15.1. Max ll:   -2803.0914,   -2803.0911

(Intercept)      Binary                         
   -3.16173     4.24362     0.88453     0.02605 
(Intercept)      Binary                         
   -3.17318     4.25916     0.89426     0.03469 
attr(,"variance proportions")
Residual                   
  0.2232   0.5458   0.2311 
         (Intercept) Binary               
Estimate     -3.1617 4.2436 0.8845 0.02605
SE            0.3873 0.5239 0.3177 0.39778
Time         23.1,         16.8. Max ll:   -2709.9614,   -2709.9611

(Intercept)      Binary                         
     -3.625       4.897       1.278       0.269 
(Intercept)      Binary                         
    -3.6054      4.8702      1.2638      0.2581 
attr(,"variance proportions")
Residual                   
  0.1714   0.6067   0.2219 
         (Intercept) Binary              
Estimate     -3.6252 4.8970 1.2777 0.2690
SE            0.5914 0.8001 0.3941 0.4623
Time         11.8,          7.3. Max ll:   -2731.5355,   -2731.5334

(Intercept)      Binary                         
    -3.2488      4.3347      0.9023      0.1602 
(Intercept)      Binary                         
    -3.2375      4.3194      0.8935      0.1503 
attr(,"variance proportions")
Residual                   
  0.2171   0.5306   0.2523 
         (Intercept) Binary              
Estimate     -3.2488 4.3347 0.9023 0.1602
SE            0.3619 0.4871 0.2922 0.3419
Time         20.5,         17.8. Max ll:   -2719.6435,   -2719.6428

(Intercept)      Binary                         
    -4.4644      6.1794      1.7044      0.9144 
(Intercept)      Binary                         
    -4.5031      6.2330      1.7238      0.9341 
attr(,"variance proportions")
Residual                   
  0.1093   0.6126   0.2781 
         (Intercept) Binary              
Estimate     -4.4644  6.179 1.7044 0.9144
SE            0.7713  1.073 0.3928 0.4307
Time         14.3,         16.8. Max ll:   -2702.0254,   -2702.0269

(Intercept)      Binary                         
    -2.8263      3.6975      0.3116      0.1569 
(Intercept)      Binary                         
    -2.8349      3.7086      0.3201      0.1640 
attr(,"variance proportions")
Residual                   
  0.2813   0.3874   0.3314 
         (Intercept) Binary              
Estimate     -2.8263 3.6975 0.3116 0.1569
SE            0.2705 0.3581 0.3099 0.2873
Time         25.8,         10.9. Max ll:   -2743.2777,   -2743.2771

(Intercept)      Binary                         
    -3.0707      4.0870      0.9175     -0.1502 
(Intercept)      Binary                         
    -3.0505      4.0601      0.9016     -0.1716 
attr(,"variance proportions")
Residual                   
  0.2322   0.5721   0.1956 
         (Intercept) Binary               
Estimate     -3.0707 4.0870 0.9175 -0.1502
SE            0.3765 0.5045 0.3152  0.4166
Time         18.2,         25.0. Max ll:   -2832.3663,   -2832.3646

(Intercept)      Binary                         
    -3.1727      4.1588      0.6502      0.3095 
(Intercept)      Binary                         
    -3.1702      4.1560      0.6473      0.3075 
attr(,"variance proportions")
Residual                   
  0.2342   0.4474   0.3185 
         (Intercept) Binary              
Estimate     -3.1727  4.159 0.6502 0.3095
SE            0.3616  0.477 0.3218 0.3243
Time          5.4,          6.8. Max ll:   -2655.4698,   -2655.4703

(Intercept)      Binary                         
    -3.5266      4.7762      1.0314      0.5086 
(Intercept)      Binary                         
    -3.5291      4.7796      1.0341      0.5088 
attr(,"variance proportions")
Residual                   
  0.1826   0.5136   0.3038 
         (Intercept) Binary              
Estimate     -3.5266 4.7762 1.0314 0.5086
SE            0.4884 0.6666 0.3525 0.3706
Time         15.8,         17.7. Max ll:   -2710.7652,   -2710.7651

(Intercept)      Binary                         
    -2.5484      3.4448      0.1328     -0.2769 
(Intercept)      Binary                         
    -2.5481      3.4451      0.1297     -0.2737 
attr(,"variance proportions")
Residual                   
  0.3449   0.3927   0.2623 
         (Intercept) Binary               
Estimate     -2.5484  3.445 0.1328 -0.2769
SE            0.2035  0.280 0.2696  0.3055
Time         14.5,         10.4. Max ll:   -2782.1826,   -2782.1829

(Intercept)      Binary                         
    -2.6879      3.5793      0.4797     -0.3159 
(Intercept)      Binary                         
    -2.6967      3.5912      0.4918     -0.3119 
attr(,"variance proportions")
Residual                   
  0.2970   0.4856   0.2174 
         (Intercept) Binary               
Estimate     -2.6879 3.5793 0.4797 -0.3159
SE            0.2409 0.3252 0.2664  0.3408
Time         37.2,          6.6. Max ll:   -2857.1726,   -2857.1719

(Intercept)      Binary                         
    -3.5197      4.5932      1.0615      0.5975 
(Intercept)      Binary                         
    -3.5345      4.6120      1.0708      0.6089 
attr(,"variance proportions")
Residual                   
  0.1737   0.5069   0.3194 
         (Intercept) Binary              
Estimate     -3.5197 4.5932 1.0615 0.5975
SE            0.4972 0.6534 0.3616 0.3570
Time         26.2,         22.7. Max ll:   -2849.6794,   -2849.6787

(Intercept)      Binary                         
   -2.99804     3.99226     0.76219     0.01046 
(Intercept)      Binary                         
  -2.991901    3.984008    0.755578    0.005773 
attr(,"variance proportions")
Residual                   
  0.2419   0.5149   0.2433 
         (Intercept) Binary               
Estimate     -2.9980 3.9923 0.7622 0.01046
SE            0.3101 0.4181 0.2843 0.33903
Time          5.7,          6.3. Max ll:   -2821.0137,   -2821.0146

(Intercept)      Binary                         
    -2.9105      3.7849      0.7159     -0.5208 
(Intercept)      Binary                         
    -2.9180      3.7949      0.7222     -0.5116 
attr(,"variance proportions")
Residual                   
  0.2733   0.5628   0.1639 
         (Intercept) Binary               
Estimate     -2.9105 3.7849 0.7159 -0.5208
SE            0.3016 0.3961 0.2810  0.4445
Time         23.5,         23.5. Max ll:   -2654.8796,   -2654.8795

(Intercept)      Binary                         
   -3.14467     4.17722     0.89514     0.09991 
(Intercept)      Binary                         
   -3.13957     4.16902     0.89418     0.08695 
attr(,"variance proportions")
Residual                   
  0.2205   0.5391   0.2405 
         (Intercept) Binary               
Estimate     -3.1447 4.1772 0.8951 0.09991
SE            0.3697 0.4967 0.3087 0.36337
Time          9.6,         13.8. Max ll:   -2801.1212,   -2801.1213

(Intercept)      Binary                         
    -3.4530      4.6777      1.0444      0.3239 
(Intercept)      Binary                         
    -3.4527      4.6770      1.0457      0.3223 
attr(,"variance proportions")
Residual                   
  0.1914   0.5445   0.2641 
         (Intercept) Binary              
Estimate     -3.4530 4.6777 1.0444 0.3239
SE            0.4704 0.6434 0.3501 0.3736
Time         38.8,         17.2. Max ll:   -2697.2461,   -2697.2459

(Intercept)      Binary                         
    -3.5680      4.4687      1.1718      0.3754 
(Intercept)      Binary                         
    -3.5541      4.4517      1.1620      0.3664 
attr(,"variance proportions")
Residual                   
  0.1773   0.5668   0.2558 
         (Intercept) Binary              
Estimate     -3.5680 4.4687 1.1718 0.3754
SE            0.5209 0.6555 0.3604 0.4087
Time          9.9,          8.3. Max ll:   -2762.9871,   -2762.9884

(Intercept)      Binary                         
    -3.0594      3.9578      0.8123     -0.3610 
(Intercept)      Binary                         
    -3.0444      3.9381      0.7969     -0.3681 
attr(,"variance proportions")
Residual                   
  0.2557   0.5673   0.1770 
         (Intercept) Binary               
Estimate     -3.0594 3.9578 0.8123 -0.3610
SE            0.3263 0.4254 0.2867  0.4105
Time         22.1,         26.4. Max ll:   -2623.0103,   -2623.0092

(Intercept)      Binary                         
   -2.92019     3.99500     0.60893    -0.08805 
(Intercept)      Binary                         
   -2.91969     3.99520     0.60793    -0.08754 
attr(,"variance proportions")
Residual                   
  0.2665   0.4894   0.2441 
         (Intercept) Binary                
Estimate     -2.9202 3.9950 0.6089 -0.08805
SE            0.2884 0.3967 0.2828  0.33062
Time         13.3,         14.0. Max ll:   -2741.6145,   -2741.6146

(Intercept)      Binary                         
    -3.0191      4.1467      0.6068      0.2539 
(Intercept)      Binary                         
    -3.0158      4.1426      0.6036      0.2516 
attr(,"variance proportions")
Residual                   
  0.2430   0.4444   0.3125 
         (Intercept) Binary              
Estimate     -3.0191 4.1467 0.6068 0.2539
SE            0.3405 0.4703 0.3296 0.3177
Time         19.7,         11.6. Max ll:   -2754.9105,   -2754.9104

(Intercept)      Binary                         
    -3.1113      3.9482      0.8101     -0.1061 
(Intercept)      Binary                         
   -3.14104     3.98559     0.83164    -0.07186 
attr(,"variance proportions")
Residual                   
  0.2365   0.5433   0.2201 
         (Intercept) Binary               
Estimate     -3.1113 3.9482 0.8101 -0.1061
SE            0.3392 0.4349 0.2878  0.3809
Time         11.6,         16.9. Max ll:   -2686.3897,   -2686.3850

(Intercept)      Binary                         
    -2.8393      3.7168      0.5725     -0.1982 
(Intercept)      Binary                         
    -2.8454      3.7248      0.5783     -0.1917 
attr(,"variance proportions")
Residual                   
  0.2771   0.4941   0.2288 
         (Intercept) Binary               
Estimate     -2.8393 3.7168 0.5725 -0.1982
SE            0.2769 0.3665 0.2774  0.3508
Time         24.1,         21.4. Max ll:   -2757.3076,   -2757.3083

(Intercept)      Binary                         
   -3.10187     4.13678     0.78083     0.02054 
(Intercept)      Binary                         
  -3.087071    4.116978    0.768161    0.007932 
attr(,"variance proportions")
Residual                   
  0.2402   0.5178   0.2421 
         (Intercept) Binary               
Estimate     -3.1019 4.1368 0.7808 0.02054
SE            0.3515 0.4708 0.3023 0.36275
Time         20.0,         17.8. Max ll:   -2712.5176,   -2712.5161

(Intercept)      Binary                         
    -3.7821      5.1336      1.3021      0.4485 
(Intercept)      Binary                         
     -3.765       5.111       1.291       0.440 
attr(,"variance proportions")
Residual                   
  0.1616   0.5875   0.2509 
         (Intercept) Binary              
Estimate     -3.7821 5.1336 1.3021 0.4485
SE            0.6317 0.8624 0.4021 0.4564
Time         25.1,         19.6. Max ll:   -2650.1462,   -2650.1477

(Intercept)      Binary                         
   -3.19204     4.29838     0.94724     0.05537 
(Intercept)      Binary                         
   -3.18171     4.28520     0.93833     0.04749 
attr(,"variance proportions")
Residual                   
  0.2172   0.5551   0.2277 
         (Intercept) Binary               
Estimate     -3.1920 4.2984 0.9472 0.05537
SE            0.4098 0.5552 0.3306 0.40000
Time         25.9,          8.1. Max ll:   -2768.4679,   -2768.4698

(Intercept)      Binary                         
   -3.00350     4.01653     0.65044     0.05291 
(Intercept)      Binary                         
   -2.97403     3.97999     0.62111     0.02973 
attr(,"variance proportions")
Residual                   
  0.2570   0.4783   0.2647 
         (Intercept) Binary               
Estimate      -3.004  4.017 0.6504 0.05291
SE             0.331  0.448 0.3142 0.33943
Time         18.8,         11.0. Max ll:   -2703.6492,   -2703.6541

(Intercept)      Binary                         
     -4.965       6.621       1.813       1.373 
(Intercept)      Binary                         
     -4.993       6.659       1.824       1.387 
attr(,"variance proportions")
Residual                   
 0.08928  0.55350  0.35722 
         (Intercept) Binary              
Estimate      -4.965  6.621 1.8126 1.3731
SE             1.110  1.485 0.5114 0.4926
Time         11.9,          7.0. Max ll:   -2704.0546,   -2704.0532

(Intercept)      Binary                         
    -3.0587      4.0983      0.5858      0.2205 
(Intercept)      Binary                         
    -3.0622      4.1031      0.5896      0.2215 
attr(,"variance proportions")
Residual                   
  0.2468   0.4451   0.3080 
         (Intercept) Binary              
Estimate     -3.0587 4.0983 0.5858 0.2205
SE            0.3246 0.4398 0.3075 0.3139
Time         27.7,         22.7. Max ll:   -2681.1876,   -2681.1873

(Intercept)      Binary                         
   -2.99664     3.90846     0.60526     0.08917 
(Intercept)      Binary                         
   -2.99940     3.91291     0.61028     0.08726 
attr(,"variance proportions")
Residual                   
  0.2543   0.4682   0.2775 
         (Intercept) Binary               
Estimate      -2.997 3.9085 0.6053 0.08917
SE             0.325 0.4298 0.3139 0.33125
Time         19.4,         15.3. Max ll:   -2697.4757,   -2697.4757

(Intercept)      Binary                         
   -2.90238     4.00198     0.62882    -0.01734 
(Intercept)      Binary                         
   -2.91152     4.01423     0.63754    -0.01059 
attr(,"variance proportions")
Residual                   
  0.2576   0.4874   0.2549 
         (Intercept) Binary                
Estimate     -2.9024 4.0020 0.6288 -0.01734
SE            0.2912 0.4056 0.2874  0.32088
Time         11.7,         17.7. Max ll:   -2788.8708,   -2788.8692

(Intercept)      Binary                         
    -2.7045      3.6774      0.2285     -0.1323 
(Intercept)      Binary                         
    -2.7068      3.6805      0.2301     -0.1285 
attr(,"variance proportions")
Residual                   
  0.3187   0.4011   0.2802 
         (Intercept) Binary               
Estimate     -2.7045 3.6774 0.2285 -0.1323
SE            0.2377 0.3276 0.2918  0.3041
Time         24.0,         19.6. Max ll:   -2663.0191,   -2663.0192

(Intercept)      Binary                         
    -2.8175      3.6386      0.5459     -0.4015 
(Intercept)      Binary                         
    -2.8297      3.6546      0.5579     -0.3884 
attr(,"variance proportions")
Residual                   
   0.292    0.510    0.198 
         (Intercept) Binary               
Estimate      -2.817 3.6386 0.5459 -0.4015
SE             0.268 0.3509 0.2717  0.3838
Time         21.0,         22.4. Max ll:   -2683.9449,   -2683.9442

(Intercept)      Binary                         
    -2.7614      3.6960      0.4532     -0.2251 
(Intercept)      Binary                         
    -2.7759      3.7157      0.4692     -0.2115 
attr(,"variance proportions")
Residual                   
  0.2934   0.4691   0.2375 
         (Intercept) Binary               
Estimate     -2.7614 3.6960 0.4532 -0.2251
SE            0.2583 0.3502 0.2828  0.3323
Time         25.5,         19.2. Max ll:   -2745.8375,   -2745.8383

(Intercept)      Binary                         
    -3.1535      4.2105      0.7249      0.2730 
(Intercept)      Binary                         
    -3.1785      4.2440      0.7453      0.2929 
attr(,"variance proportions")
Residual                   
  0.2248   0.4738   0.3014 
         (Intercept) Binary              
Estimate     -3.1535  4.210 0.7249 0.2730
SE            0.3599  0.484 0.3144 0.3315
Time         27.7,         18.9. Max ll:   -2711.1002,   -2711.0966


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label: clean_pre_loading (with options) 
List of 1
 $ echo: logi FALSE


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label: loading_assign_sim_dat

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  |................................................                      |  69%
label: loading_one_dat (with options) 
List of 1
 $ cache: num 1


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label: loading_show_res

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  ordinary text without R code


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  |..................................................                    |  71%
label: pre_loadings_pl (with options) 
List of 1
 $ echo: logi FALSE


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  |..................................................                    |  72%
  ordinary text without R code


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label: loadings_pl (with options) 
List of 2
 $ cache  : num 1
 $ message: logi TRUE


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  ordinary text without R code


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label: show_loadings_pl_show

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label: loadings_nleq_pl (with options) 
List of 2
 $ cache  : num 1
 $ message: logi TRUE


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label: show_loadings_nleq_pl

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label: loadings_sim_study
         (Intercept) Binary                                           
Estimate      -2.053  4.193 -0.2298 0.9849 0.8875 -0.5781 0.6671 -1.19
Truth         -2.000  4.000 -0.3942 1.1274 1.0000 -0.5058 0.6496 -1.00
Time         72.1. Max ll:   -4395.5206

         (Intercept) Binary                                            
Estimate      -2.041  4.122 -0.2802 0.9964 0.9152 -0.6492 0.6032 -1.222
Truth         -2.000  4.000 -0.3942 1.1274 1.0000 -0.5058 0.6496 -1.000
Time         76.8. Max ll:   -4292.2899

         (Intercept) Binary                                          
Estimate      -1.954  3.957 -0.4962 1.125 1.064 -0.5981 0.6764 -1.144
Truth         -2.000  4.000 -0.3942 1.127 1.000 -0.5058 0.6496 -1.000
Time         73.8. Max ll:   -4326.5815

         (Intercept) Binary                                           
Estimate      -2.081   4.21 -0.4313 1.196 1.079 -0.3455 0.6563 -0.9428
Truth         -2.000   4.00 -0.3942 1.127 1.000 -0.5058 0.6496 -1.0000
Time         74.2. Max ll:   -4363.1704

         (Intercept) Binary                                          
Estimate      -1.761  3.673 -0.7327 1.320 1.168 -0.7034 0.8034 -1.002
Truth         -2.000  4.000 -0.3942 1.127 1.000 -0.5058 0.6496 -1.000
Time         70.6. Max ll:   -4427.5856

         (Intercept) Binary                                          
Estimate      -1.912  3.818 -0.3517 1.174 0.8831 -0.8667 0.8055 -1.11
Truth         -2.000  4.000 -0.3942 1.127 1.0000 -0.5058 0.6496 -1.00
Time         71.5. Max ll:   -4319.9260

         (Intercept) Binary                                          
Estimate      -1.855  3.539 -0.5836 1.320 1.031 -0.6889 0.6438 -1.224
Truth         -2.000  4.000 -0.3942 1.127 1.000 -0.5058 0.6496 -1.000
Time         73.7. Max ll:   -4473.3598

         (Intercept) Binary                                           
Estimate      -1.972  3.827 -0.4241 1.115 1.033 -0.3852 0.5416 -0.8847
Truth         -2.000  4.000 -0.3942 1.127 1.000 -0.5058 0.6496 -1.0000
Time         63.0. Max ll:   -4392.1278

         (Intercept) Binary                                          
Estimate      -1.758  3.655 -0.6797 1.208 1.142 -0.7824 0.7729 -1.123
Truth         -2.000  4.000 -0.3942 1.127 1.000 -0.5058 0.6496 -1.000
Time         76.2. Max ll:   -4402.6644

         (Intercept) Binary                                            
Estimate      -2.071  4.072 -0.4300 1.271 0.9176 -0.2868 0.5098 -0.8079
Truth         -2.000  4.000 -0.3942 1.127 1.0000 -0.5058 0.6496 -1.0000
Time         75.6. Max ll:   -4290.3400

         (Intercept) Binary                                           
Estimate       -1.88  3.936 -0.4741 1.124 0.9737 -0.6571 0.7954 -1.051
Truth          -2.00  4.000 -0.3942 1.127 1.0000 -0.5058 0.6496 -1.000
Time         74.4. Max ll:   -4392.1055

         (Intercept) Binary                                          
Estimate      -2.112  4.097 -0.4200 1.251 1.094 -0.5048 0.6629 -1.112
Truth         -2.000  4.000 -0.3942 1.127 1.000 -0.5058 0.6496 -1.000
Time        100.8. Max ll:   -4316.2796

         (Intercept) Binary                                           
Estimate       -2.05   3.98 -0.4284 1.075 0.9944 -0.4427 0.5961 -1.054
Truth          -2.00   4.00 -0.3942 1.127 1.0000 -0.5058 0.6496 -1.000
Time         76.3. Max ll:   -4308.1808

         (Intercept) Binary                                           
Estimate      -2.067   4.29 -0.2698 1.121 0.9817 -0.5124 0.5458 -1.139
Truth         -2.000   4.00 -0.3942 1.127 1.0000 -0.5058 0.6496 -1.000
Time         78.6. Max ll:   -4393.9034

         (Intercept) Binary                                           
Estimate      -2.032  4.117 -0.3868 1.182 1.003 -0.3404 0.5515 -0.7907
Truth         -2.000  4.000 -0.3942 1.127 1.000 -0.5058 0.6496 -1.0000
Time         73.7. Max ll:   -4337.5184

         (Intercept) Binary                                            
Estimate      -1.816  3.584 -0.4684 1.081 0.8506 -0.6493 0.7018 -0.9337
Truth         -2.000  4.000 -0.3942 1.127 1.0000 -0.5058 0.6496 -1.0000
Time         75.3. Max ll:   -4390.6236

         (Intercept) Binary                                          
Estimate      -2.171  4.325 -0.2060 1.008 1.038 -0.5262 0.6707 -1.224
Truth         -2.000  4.000 -0.3942 1.127 1.000 -0.5058 0.6496 -1.000
Time         77.5. Max ll:   -4380.6590

         (Intercept) Binary                                            
Estimate      -1.852  3.707 -0.5354 1.181 0.9674 -0.6312 0.6697 -0.9591
Truth         -2.000  4.000 -0.3942 1.127 1.0000 -0.5058 0.6496 -1.0000
Time         74.5. Max ll:   -4321.1143

         (Intercept) Binary                                          
Estimate      -1.837  3.739 -0.3843 1.149 0.8793 -0.9356 0.6531 -1.37
Truth         -2.000  4.000 -0.3942 1.127 1.0000 -0.5058 0.6496 -1.00
Time        122.7. Max ll:   -4430.8984

         (Intercept) Binary                                           
Estimate      -2.048  4.304 -0.3624 1.118 0.9561 -0.5290 0.6725 -1.114
Truth         -2.000  4.000 -0.3942 1.127 1.0000 -0.5058 0.6496 -1.000
Time         70.9. Max ll:   -4294.5649

         (Intercept) Binary                                           
Estimate      -1.934  3.961 -0.3022 1.123 0.8777 -0.6057 0.5885 -1.022
Truth         -2.000  4.000 -0.3942 1.127 1.0000 -0.5058 0.6496 -1.000
Time         86.1. Max ll:   -4399.1707

         (Intercept) Binary                                          
Estimate      -1.958  3.749 -0.5025 1.106 1.073 -0.5677 0.6526 -1.107
Truth         -2.000  4.000 -0.3942 1.127 1.000 -0.5058 0.6496 -1.000
Time         88.3. Max ll:   -4356.5822

         (Intercept) Binary                                            
Estimate      -2.061  4.043 -0.2275 0.9665 0.9189 -0.6237 0.7219 -1.172
Truth         -2.000  4.000 -0.3942 1.1274 1.0000 -0.5058 0.6496 -1.000
Time         76.4. Max ll:   -4373.2042

         (Intercept) Binary                                          
Estimate      -1.873   3.85 -0.5279 1.108 1.064 -0.6430 0.5668 -1.056
Truth         -2.000   4.00 -0.3942 1.127 1.000 -0.5058 0.6496 -1.000
Time         77.2. Max ll:   -4309.0397

         (Intercept) Binary                                        
Estimate      -2.071  4.259 -0.3689 1.177 1.01 -0.4911 0.5890 -1.15
Truth         -2.000  4.000 -0.3942 1.127 1.00 -0.5058 0.6496 -1.00
Time         87.8. Max ll:   -4347.8675

         (Intercept) Binary                                          
Estimate      -1.693  3.509 -0.8653 1.390 1.132 -0.9271 0.8370 -1.208
Truth         -2.000  4.000 -0.3942 1.127 1.000 -0.5058 0.6496 -1.000
Time         72.8. Max ll:   -4375.8549

         (Intercept) Binary                                          
Estimate      -2.042  4.328 -0.2748 1.084 1.031 -0.6428 0.7044 -1.186
Truth         -2.000  4.000 -0.3942 1.127 1.000 -0.5058 0.6496 -1.000
Time         79.3. Max ll:   -4363.7035

         (Intercept) Binary                                           
Estimate      -1.934  3.978 -0.2393 1.013 0.8374 -0.7019 0.8612 -1.111
Truth         -2.000  4.000 -0.3942 1.127 1.0000 -0.5058 0.6496 -1.000
Time         86.3. Max ll:   -4466.5790

         (Intercept) Binary                                           
Estimate      -1.986  3.864 -0.5248 1.131 1.124 -0.4335 0.6876 -0.9752
Truth         -2.000  4.000 -0.3942 1.127 1.000 -0.5058 0.6496 -1.0000
Time         90.1. Max ll:   -4373.6275

         (Intercept) Binary                                            
Estimate      -1.765  3.447 -0.5916 1.165 0.9087 -0.8215 0.7575 -0.9905
Truth         -2.000  4.000 -0.3942 1.127 1.0000 -0.5058 0.6496 -1.0000
Time         66.7. Max ll:   -4318.9956

         (Intercept) Binary                                           
Estimate      -1.769  3.596 -0.6388 1.201 0.9826 -0.8140 0.6811 -1.161
Truth         -2.000  4.000 -0.3942 1.127 1.0000 -0.5058 0.6496 -1.000
Time         74.7. Max ll:   -4338.8528

         (Intercept) Binary                                             
Estimate      -2.579  5.095 -0.1128 1.101 0.9658  0.04665 0.4953 -0.7177
Truth         -2.000  4.000 -0.3942 1.127 1.0000 -0.50580 0.6496 -1.0000
Time         84.4. Max ll:   -4224.2779

         (Intercept) Binary                                           
Estimate        -1.9  3.676 -0.4001 1.043 0.9241 -0.5890 0.6056 -1.153
Truth           -2.0  4.000 -0.3942 1.127 1.0000 -0.5058 0.6496 -1.000
Time         85.3. Max ll:   -4471.9661

         (Intercept) Binary                                           
Estimate       -2.13  4.149 -0.2481 1.079 0.9239 -0.5418 0.6210 -1.093
Truth          -2.00  4.000 -0.3942 1.127 1.0000 -0.5058 0.6496 -1.000
Time         93.6. Max ll:   -4276.7022

         (Intercept) Binary                                          
Estimate      -2.129  4.317 -0.3403 1.257 1.103 -0.5524 0.5002 -1.217
Truth         -2.000  4.000 -0.3942 1.127 1.000 -0.5058 0.6496 -1.000
Time         89.9. Max ll:   -4332.3312

         (Intercept) Binary                                            
Estimate      -2.063  4.098 -0.4089 1.212 0.9922 -0.3152 0.4545 -0.9248
Truth         -2.000  4.000 -0.3942 1.127 1.0000 -0.5058 0.6496 -1.0000
Time         90.3. Max ll:   -4339.0285

         (Intercept) Binary                                            
Estimate      -2.086  3.819 -0.4173 1.139 0.9889 -0.3475 0.5232 -0.9504
Truth         -2.000  4.000 -0.3942 1.127 1.0000 -0.5058 0.6496 -1.0000
Time         75.7. Max ll:   -4316.2749

         (Intercept) Binary                                           
Estimate      -2.191  4.254 -0.5258 1.306 1.113 -0.1926 0.5441 -0.8696
Truth         -2.000  4.000 -0.3942 1.127 1.000 -0.5058 0.6496 -1.0000
Time         75.1. Max ll:   -4268.1531

         (Intercept) Binary                                           
Estimate       -2.04   4.02 -0.2637 0.9665 0.9791 -0.9439 0.8186 -1.46
Truth          -2.00   4.00 -0.3942 1.1274 1.0000 -0.5058 0.6496 -1.00
Time         69.0. Max ll:   -4268.2668

         (Intercept) Binary                                          
Estimate      -2.045   4.11 -0.2804 1.030 0.92 -0.4226 0.6616 -0.9568
Truth         -2.000   4.00 -0.3942 1.127 1.00 -0.5058 0.6496 -1.0000
Time        119.4. Max ll:   -4388.3865

         (Intercept) Binary                                           
Estimate      -1.966  3.983 -0.3808 1.187 0.8906 -0.5510 0.5453 -1.127
Truth         -2.000  4.000 -0.3942 1.127 1.0000 -0.5058 0.6496 -1.000
Time         77.7. Max ll:   -4407.2292

         (Intercept) Binary                                           
Estimate      -2.112   4.17 -0.4109 1.236 1.028 -0.2814 0.5557 -0.8248
Truth         -2.000   4.00 -0.3942 1.127 1.000 -0.5058 0.6496 -1.0000
Time         91.5. Max ll:   -4332.2359

         (Intercept) Binary                                            
Estimate      -2.244    4.7 -0.05866 1.006 0.8425 -0.2309 0.5947 -0.824
Truth         -2.000    4.0 -0.39423 1.127 1.0000 -0.5058 0.6496 -1.000
Time         91.9. Max ll:   -4385.8508

         (Intercept) Binary                                           
Estimate      -2.009  4.154 -0.3381 1.074 1.008 -0.5128 0.7617 -0.9153
Truth         -2.000  4.000 -0.3942 1.127 1.000 -0.5058 0.6496 -1.0000
Time         89.9. Max ll:   -4385.7186

         (Intercept) Binary                                           
Estimate      -1.951  3.842 -0.5735 1.346 1.112 -0.4395 0.5613 -0.9494
Truth         -2.000  4.000 -0.3942 1.127 1.000 -0.5058 0.6496 -1.0000
Time         62.1. Max ll:   -4394.5320

         (Intercept) Binary                                           
Estimate      -2.168  4.395 -0.2106 1.091 0.9485 -0.3936 0.5238 -1.118
Truth         -2.000  4.000 -0.3942 1.127 1.0000 -0.5058 0.6496 -1.000
Time         81.0. Max ll:   -4390.1742

         (Intercept) Binary                                           
Estimate      -2.154  4.449 -0.4595 1.212 1.079 -0.1841 0.5060 -0.8118
Truth         -2.000  4.000 -0.3942 1.127 1.000 -0.5058 0.6496 -1.0000
Time         91.4. Max ll:   -4280.0757

         (Intercept) Binary                                         
Estimate      -1.837  3.533 -0.5455 1.164 1.04 -0.8977 0.6671 -1.353
Truth         -2.000  4.000 -0.3942 1.127 1.00 -0.5058 0.6496 -1.000
Time         74.9. Max ll:   -4387.5879

         (Intercept) Binary                                           
Estimate      -2.027  4.046 -0.2647 1.054 0.9153 -0.5476 0.5232 -1.092
Truth         -2.000  4.000 -0.3942 1.127 1.0000 -0.5058 0.6496 -1.000
Time         82.4. Max ll:   -4358.2662

         (Intercept) Binary                                           
Estimate      -1.958  3.946 -0.4975 1.127 1.045 -0.3939 0.6469 -0.8831
Truth         -2.000  4.000 -0.3942 1.127 1.000 -0.5058 0.6496 -1.0000
Time         76.1. Max ll:   -4400.4975


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output file: pedmod.knit.md

/usr/bin/pandoc +RTS -K512m -RTS pedmod.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output pedmod.html --lua-filter /home/boennecd/R/x86_64-pc-linux-gnu-library/4.2/rmarkdown/rmarkdown/lua/pagebreak.lua --lua-filter /home/boennecd/R/x86_64-pc-linux-gnu-library/4.2/rmarkdown/rmarkdown/lua/latex-div.lua --self-contained --variable bs3=TRUE --section-divs --template /home/boennecd/R/x86_64-pc-linux-gnu-library/4.2/rmarkdown/rmd/h/default.html --no-highlight --variable highlightjs=1 --variable theme=bootstrap --mathjax --variable 'mathjax-url=https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML' --include-in-header /tmp/RtmptteD6x/rmarkdown-str7e46627052ed.html --filter /usr/bin/pandoc-citeproc 
[WARNING] This document format requires a nonempty <title> element.
  Please specify either 'title' or 'pagetitle' in the metadata,
  e.g. by using --metadata pagetitle="..." on the command line.
  Falling back to 'pedmod.knit'

Output created: pedmod.html


processing file: pedmod.Rmd

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  ordinary text without R code


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  |.........................                                             |  36%
label: rqmc_likelihood (with options) 
List of 1
 $ cache: num 1


  ordinary text without R code


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  |..........................                                            |  37%
label: show_rqmc_likelihood

  ordinary text without R code


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  |...........................                                           |  38%
label: rqmc_est_simple (with options) 
List of 1
 $ cache: num 1


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  |...........................                                           |  39%
  ordinary text without R code


label: clean_pre_sim_study_simple (with options) 
List of 1
 $ echo: logi FALSE


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  |............................                                          |  40%
  ordinary text without R code


label: sim_study_simple
(Intercept)  Continuous      Binary             
     -3.226       1.039       2.158       1.243 
(Intercept)  Continuous      Binary             
     -3.211       1.034       2.148       1.230 
attr(,"variance proportions")
Residual          
  0.2262   0.7738 
         (Intercept) Continuous Binary       
Estimate     -3.2259     1.0385 2.1585 1.2426
SE            0.4296     0.1429 0.2982 0.3444
Time          9.1,          9.9. Max ll:   -1574.0667,   -1574.0658

(Intercept)  Continuous      Binary             
     -3.291       1.107       2.137       1.305 
(Intercept)  Continuous      Binary             
     -3.296       1.109       2.141       1.309 
attr(,"variance proportions")
Residual          
  0.2127   0.7873 
         (Intercept) Continuous Binary      
Estimate     -3.2908     1.1074 2.1374 1.305
SE            0.4409     0.1518 0.2977 0.340
Time          9.7,         13.4. Max ll:   -1569.6613,   -1569.6609

(Intercept)  Continuous      Binary             
    -2.8068      0.9498      1.9047      1.0250 
(Intercept)  Continuous      Binary             
     -2.817       0.953       1.912       1.034 
attr(,"variance proportions")
Residual          
  0.2623   0.7377 
         (Intercept) Continuous Binary       
Estimate     -2.8068     0.9498 1.9047 1.0250
SE            0.3244     0.1176 0.2338 0.3118
Time         11.9,         11.1. Max ll:   -1618.0764,   -1618.0755

(Intercept)  Continuous      Binary             
    -2.7593      0.9823      1.8346      0.9390 
(Intercept)  Continuous      Binary             
    -2.7689      0.9857      1.8411      0.9488 
attr(,"variance proportions")
Residual          
  0.2791   0.7209 
         (Intercept) Continuous Binary       
Estimate      -2.759     0.9823  1.835 0.9390
SE             0.288     0.1102  0.203 0.2901
Time          4.0,          9.8. Max ll:   -1616.7848,   -1616.7831

(Intercept)  Continuous      Binary             
     -3.137       1.134       2.059       1.165 
(Intercept)  Continuous      Binary             
     -3.134       1.134       2.058       1.163 
attr(,"variance proportions")
Residual          
  0.2381   0.7619 
         (Intercept) Continuous Binary       
Estimate     -3.1367     1.1344 2.0591 1.1649
SE            0.3833     0.1431 0.2628 0.3221
Time          4.9,          9.2. Max ll:   -1583.7124,   -1583.7126

(Intercept)  Continuous      Binary             
     -3.298       1.041       2.182       1.360 
(Intercept)  Continuous      Binary             
     -3.267       1.031       2.162       1.336 
attr(,"variance proportions")
Residual          
  0.2082   0.7918 
         (Intercept) Continuous Binary       
Estimate     -3.2985     1.0406 2.1824 1.3598
SE            0.4346     0.1434 0.3007 0.3324
Time         15.8,         11.4. Max ll:   -1615.3256,   -1615.3264

(Intercept)  Continuous      Binary             
    -2.5149      0.7904      1.5945      0.4589 
(Intercept)  Continuous      Binary             
    -2.5151      0.7904      1.5947      0.4596 
attr(,"variance proportions")
Residual          
  0.3871   0.6129 
         (Intercept) Continuous Binary       
Estimate     -2.5149    0.79038  1.595 0.4589
SE            0.2109    0.07513  0.149 0.2676
Time          8.2,         12.4. Max ll:   -1566.8999,   -1566.8999

(Intercept)  Continuous      Binary             
     -3.323       1.096       2.071       1.469 
(Intercept)  Continuous      Binary             
     -3.314       1.094       2.065       1.462 
attr(,"variance proportions")
Residual          
  0.1882   0.8118 
         (Intercept) Continuous Binary       
Estimate     -3.3225      1.096 2.0710 1.4689
SE            0.4919      0.170 0.3172 0.3659
Time          6.8,         10.8. Max ll:   -1590.2368,   -1590.2370

(Intercept)  Continuous      Binary             
     -3.735       1.259       2.476       1.649 
(Intercept)  Continuous      Binary             
     -3.711       1.251       2.460       1.634 
attr(,"variance proportions")
Residual          
  0.1633   0.8367 
         (Intercept) Continuous Binary       
Estimate     -3.7348      1.259 2.4757 1.6491
SE            0.6233      0.217 0.4247 0.3991
Time          7.1,         14.2. Max ll:   -1583.5849,   -1583.5846

(Intercept)  Continuous      Binary             
    -2.8240      1.0329      1.8463      0.9501 
(Intercept)  Continuous      Binary             
    -2.8285      1.0345      1.8492      0.9545 
attr(,"variance proportions")
Residual          
   0.278    0.722 
         (Intercept) Continuous Binary       
Estimate     -2.8240     1.0329 1.8463 0.9501
SE            0.3005     0.1162 0.2079 0.2941
Time          6.5,         11.5. Max ll:   -1573.0912,   -1573.0908

(Intercept)  Continuous      Binary             
     -3.464       1.114       2.301       1.391 
(Intercept)  Continuous      Binary             
     -3.454       1.112       2.295       1.384 
attr(,"variance proportions")
Residual          
  0.2004   0.7996 
         (Intercept) Continuous Binary      
Estimate     -3.4640     1.1145 2.3015 1.391
SE            0.4575     0.1541 0.3126 0.331
Time          5.2,         10.6. Max ll:   -1549.6445,   -1549.6443

(Intercept)  Continuous      Binary             
     -3.275       1.095       2.262       1.258 
(Intercept)  Continuous      Binary             
     -3.272       1.094       2.260       1.256 
attr(,"variance proportions")
Residual          
  0.2216   0.7784 
         (Intercept) Continuous Binary       
Estimate     -3.2749     1.0953 2.2617 1.2582
SE            0.4301     0.1498 0.3094 0.3394
Time          6.3,          6.8. Max ll:   -1580.3836,   -1580.3836

(Intercept)  Continuous      Binary             
    -2.7584      0.9734      1.8345      0.8728 
(Intercept)  Continuous      Binary             
    -2.7552      0.9723      1.8323      0.8696 
attr(,"variance proportions")
Residual          
  0.2953   0.7047 
         (Intercept) Continuous Binary       
Estimate     -2.7584     0.9734 1.8345 0.8728
SE            0.2911     0.1097 0.2066 0.2984
Time          5.3,          9.4. Max ll:   -1598.1032,   -1598.1023

(Intercept)  Continuous      Binary             
     -3.019       1.002       2.126       1.173 
(Intercept)  Continuous      Binary             
     -3.036       1.008       2.138       1.187 
attr(,"variance proportions")
Residual          
  0.2338   0.7662 
         (Intercept) Continuous Binary       
Estimate     -3.0191     1.0020 2.1265 1.1728
SE            0.3602     0.1263 0.2644 0.3102
Time          6.1,          7.8. Max ll:   -1647.5906,   -1647.5893

(Intercept)  Continuous      Binary             
     -3.716       1.274       2.407       1.578 
(Intercept)  Continuous      Binary             
     -3.723       1.276       2.411       1.582 
attr(,"variance proportions")
Residual          
  0.1705   0.8295 
         (Intercept) Continuous Binary       
Estimate     -3.7161     1.2741 2.4066 1.5781
SE            0.5708     0.2002 0.3796 0.3728
Time          3.9,         12.2. Max ll:   -1526.4827,   -1526.4814

(Intercept)  Continuous      Binary             
     -2.934       1.055       1.911       1.126 
(Intercept)  Continuous      Binary             
     -2.924       1.052       1.903       1.119 
attr(,"variance proportions")
Residual          
  0.2461   0.7539 
         (Intercept) Continuous Binary       
Estimate     -2.9341     1.0546 1.9110 1.1258
SE            0.3361     0.1269 0.2319 0.3028
Time         14.8,         10.5. Max ll:   -1613.5392,   -1613.5391

(Intercept)  Continuous      Binary             
    -2.8035      0.9292      1.9385      1.0237 
(Intercept)  Continuous      Binary             
    -2.8070      0.9303      1.9408      1.0271 
attr(,"variance proportions")
Residual          
  0.2637   0.7363 
         (Intercept) Continuous Binary       
Estimate     -2.8035     0.9292 1.9385 1.0237
SE            0.3003     0.1066 0.2215 0.2858
Time          8.4,          5.5. Max ll:   -1653.6128,   -1653.6129

(Intercept)  Continuous      Binary             
    -2.8805      0.9265      1.8133      1.1205 
(Intercept)  Continuous      Binary             
     -2.899       0.932       1.825       1.137 
attr(,"variance proportions")
Residual          
  0.2428   0.7572 
         (Intercept) Continuous Binary       
Estimate      -2.880     0.9265 1.8133 1.1205
SE             0.352     0.1197 0.2384 0.3268
Time          9.2,         11.7. Max ll:   -1625.5476,   -1625.5452

(Intercept)  Continuous      Binary             
     -2.858       1.001       1.852       1.009 
(Intercept)  Continuous      Binary             
     -2.860       1.001       1.853       1.011 
attr(,"variance proportions")
Residual          
  0.2669   0.7331 
         (Intercept) Continuous Binary       
Estimate     -2.8579      1.001 1.8518 1.0088
SE            0.3158      0.116 0.2177 0.2982
Time          7.5,          5.4. Max ll:   -1608.3817,   -1608.3804

(Intercept)  Continuous      Binary             
    -2.9567      0.9662      2.0162      1.0261 
(Intercept)  Continuous      Binary             
    -2.9515      0.9645      2.0127      1.0212 
attr(,"variance proportions")
Residual          
  0.2648   0.7352 
         (Intercept) Continuous Binary       
Estimate     -2.9567     0.9662 2.0162 1.0261
SE            0.3309     0.1150 0.2371 0.3053
Time          6.7,         11.2. Max ll:   -1589.7108,   -1589.7108

(Intercept)  Continuous      Binary             
     -3.383       1.144       2.231       1.388 
(Intercept)  Continuous      Binary             
     -3.378       1.142       2.227       1.384 
attr(,"variance proportions")
Residual          
  0.2003   0.7997 
         (Intercept) Continuous Binary       
Estimate     -3.3835     1.1440 2.2313 1.3884
SE            0.4847     0.1705 0.3289 0.3585
Time          5.2,          7.3. Max ll:   -1580.1220,   -1580.1218

(Intercept)  Continuous      Binary             
    -2.7232      0.9308      1.7717      0.8454 
(Intercept)  Continuous      Binary             
    -2.7427      0.9376      1.7850      0.8649 
attr(,"variance proportions")
Residual          
  0.2963   0.7037 
         (Intercept) Continuous Binary       
Estimate     -2.7232     0.9308  1.772 0.8454
SE            0.2686     0.0975  0.190 0.2750
Time          9.0,          8.6. Max ll:   -1595.5390,   -1595.5364

(Intercept)  Continuous      Binary             
     -3.530       1.139       2.372       1.439 
(Intercept)  Continuous      Binary             
     -3.516       1.135       2.361       1.428 
attr(,"variance proportions")
Residual          
  0.1933   0.8067 
         (Intercept) Continuous Binary       
Estimate     -3.5301     1.1390 2.3724 1.4392
SE            0.4895     0.1651 0.3382 0.3464
Time          5.6,          7.0. Max ll:   -1574.6020,   -1574.6036

(Intercept)  Continuous      Binary             
    -2.6764      0.9196      1.7183      0.7708 
(Intercept)  Continuous      Binary             
    -2.6848      0.9225      1.7240      0.7799 
attr(,"variance proportions")
Residual          
  0.3143   0.6857 
         (Intercept) Continuous Binary       
Estimate     -2.6764    0.91956 1.7183 0.7708
SE            0.2625    0.09736 0.1824 0.2834
Time          3.9,          9.7. Max ll:   -1581.5043,   -1581.5037

(Intercept)  Continuous      Binary             
     -3.308       1.004       2.247       1.353 
(Intercept)  Continuous      Binary             
     -3.307       1.003       2.247       1.352 
attr(,"variance proportions")
Residual          
  0.2056   0.7944 
         (Intercept) Continuous Binary       
Estimate     -3.3084     1.0040 2.2472 1.3531
SE            0.4484     0.1427 0.3136 0.3416
Time          5.2,         10.8. Max ll:   -1591.3680,   -1591.3679

(Intercept)  Continuous      Binary             
     -3.984       1.288       2.559       1.984 
(Intercept)  Continuous      Binary             
     -3.981       1.287       2.557       1.983 
attr(,"variance proportions")
Residual          
   0.121    0.879 
         (Intercept) Continuous Binary       
Estimate     -3.9838     1.2875 2.5588 1.9836
SE            0.7132     0.2381 0.4676 0.4102
Time         24.5,          7.8. Max ll:   -1641.9077,   -1641.9075

(Intercept)  Continuous      Binary             
    -2.8043      0.9353      1.8464      0.9950 
(Intercept)  Continuous      Binary             
     -2.815       0.938       1.854       1.005 
attr(,"variance proportions")
Residual          
   0.268    0.732 
         (Intercept) Continuous Binary      
Estimate     -2.8043     0.9353 1.8464 0.995
SE            0.2997     0.1059 0.2109 0.291
Time          5.5,         12.5. Max ll:   -1610.3250,   -1610.3232

(Intercept)  Continuous      Binary             
    -2.7686      0.9774      1.9829      1.0085 
(Intercept)  Continuous      Binary             
    -2.7613      0.9749      1.9777      1.0015 
attr(,"variance proportions")
Residual          
  0.2686   0.7314 
         (Intercept) Continuous Binary       
Estimate     -2.7686     0.9774 1.9829 1.0085
SE            0.2968     0.1115 0.2207 0.2887
Time          4.7,          7.1. Max ll:   -1699.3578,   -1699.3561

(Intercept)  Continuous      Binary             
    -2.7637      0.9000      1.9396      0.8837 
(Intercept)  Continuous      Binary             
    -2.7726      0.9028      1.9460      0.8924 
attr(,"variance proportions")
Residual          
  0.2906   0.7094 
         (Intercept) Continuous Binary       
Estimate     -2.7637    0.90003 1.9396 0.8837
SE            0.2733    0.09482 0.2019 0.2762
Time          4.9,          9.5. Max ll:   -1615.5320,   -1615.5305

(Intercept)  Continuous      Binary             
     -3.190       1.169       2.173       1.370 
(Intercept)  Continuous      Binary             
     -3.179       1.165       2.164       1.362 
attr(,"variance proportions")
Residual          
  0.2039   0.7961 
         (Intercept) Continuous Binary       
Estimate     -3.1904     1.1688 2.1725 1.3699
SE            0.4163     0.1571 0.2963 0.3273
Time          6.0,         13.6. Max ll:   -1608.8413,   -1608.8405

(Intercept)  Continuous      Binary             
    -2.6756      0.8857      1.8309      0.6906 
(Intercept)  Continuous      Binary             
    -2.6788      0.8868      1.8332      0.6940 
attr(,"variance proportions")
Residual          
  0.3331   0.6669 
         (Intercept) Continuous Binary       
Estimate     -2.6756    0.88574 1.8309 0.6906
SE            0.2425    0.08814 0.1804 0.2639
Time          5.2,          5.4. Max ll:   -1577.1618,   -1577.1616

(Intercept)  Continuous      Binary             
    -2.9307      0.9919      1.9318      1.1919 
(Intercept)  Continuous      Binary             
    -2.9386      0.9945      1.9368      1.1983 
attr(,"variance proportions")
Residual          
  0.2318   0.7682 
         (Intercept) Continuous Binary       
Estimate     -2.9307     0.9919 1.9318 1.1919
SE            0.3668     0.1307 0.2538 0.3237
Time          4.9,          5.8. Max ll:   -1650.7065,   -1650.7056

(Intercept)  Continuous      Binary             
    -2.5901      0.8567      1.6904      0.7512 
(Intercept)  Continuous      Binary             
    -2.5874      0.8558      1.6887      0.7479 
attr(,"variance proportions")
Residual          
  0.3213   0.6787 
         (Intercept) Continuous Binary       
Estimate     -2.5901    0.85672 1.6904 0.7512
SE            0.2463    0.08775 0.1763 0.2724
Time         10.1,          5.6. Max ll:   -1611.1538,   -1611.1544

(Intercept)  Continuous      Binary             
     -3.882       1.309       2.673       1.666 
(Intercept)  Continuous      Binary             
     -3.873       1.306       2.667       1.661 
attr(,"variance proportions")
Residual          
  0.1596   0.8404 
         (Intercept) Continuous Binary       
Estimate     -3.8815     1.3092 2.6728 1.6661
SE            0.6723     0.2339 0.4699 0.4158
Time         10.2,          6.9. Max ll:   -1543.1585,   -1543.1577

(Intercept)  Continuous      Binary             
     -3.302       1.002       2.224       1.390 
(Intercept)  Continuous      Binary             
    -3.2826      0.9965      2.2103      1.3753 
attr(,"variance proportions")
Residual          
  0.2018   0.7982 
         (Intercept) Continuous Binary       
Estimate     -3.3023     1.0024 2.2238 1.3899
SE            0.4569     0.1448 0.3169 0.3455
Time         10.5,         10.8. Max ll:   -1643.4977,   -1643.4958

(Intercept)  Continuous      Binary             
    -2.8096      0.8574      1.9157      0.7994 
(Intercept)  Continuous      Binary             
    -2.8133      0.8585      1.9181      0.8032 
attr(,"variance proportions")
Residual          
  0.3093   0.6907 
         (Intercept) Continuous Binary       
Estimate     -2.8096    0.85744 1.9157 0.7994
SE            0.2738    0.09143 0.1983 0.2800
Time         10.9,          9.3. Max ll:   -1574.7349,   -1574.7348

(Intercept)  Continuous      Binary             
    -2.6379      0.8634      1.7388      0.6046 
(Intercept)  Continuous      Binary             
    -2.6388      0.8637      1.7394      0.6058 
attr(,"variance proportions")
Residual          
   0.353    0.647 
         (Intercept) Continuous Binary       
Estimate     -2.6379    0.86345  1.739 0.6046
SE            0.2305    0.08599  0.166 0.2627
Time         11.6,         10.6. Max ll:   -1544.2522,   -1544.2522

(Intercept)  Continuous      Binary             
     -3.732       1.313       2.482       1.562 
(Intercept)  Continuous      Binary             
     -3.763       1.324       2.502       1.582 
attr(,"variance proportions")
Residual          
  0.1705   0.8295 
         (Intercept) Continuous Binary       
Estimate     -3.7322      1.313 2.4816 1.5617
SE            0.5843      0.213 0.3997 0.3793
Time          6.2,          6.9. Max ll:   -1517.1693,   -1517.1690

(Intercept)  Continuous      Binary             
    -2.7332      0.9528      1.8472      0.8795 
(Intercept)  Continuous      Binary             
    -2.7538      0.9595      1.8619      0.9001 
attr(,"variance proportions")
Residual          
   0.289    0.711 
         (Intercept) Continuous Binary       
Estimate     -2.7332     0.9528 1.8472 0.8795
SE            0.2773     0.1032 0.2035 0.2821
Time          5.0,          9.8. Max ll:   -1606.8309,   -1606.8306

(Intercept)  Continuous      Binary             
     -3.119       1.042       2.045       1.021 
(Intercept)  Continuous      Binary             
     -3.111       1.039       2.040       1.014 
attr(,"variance proportions")
Residual          
  0.2662   0.7338 
         (Intercept) Continuous Binary       
Estimate     -3.1189     1.0420 2.0451 1.0212
SE            0.3535     0.1238 0.2443 0.3049
Time          5.1,          9.0. Max ll:   -1530.2611,   -1530.2607

(Intercept)  Continuous      Binary             
    -2.7945      0.9446      1.8856      1.0420 
(Intercept)  Continuous      Binary             
     -2.795       0.945       1.886       1.043 
attr(,"variance proportions")
Residual          
  0.2606   0.7394 
         (Intercept) Continuous Binary       
Estimate     -2.7945     0.9446 1.8856 1.0420
SE            0.2984     0.1072 0.2135 0.2896
Time          9.4,          8.8. Max ll:   -1643.2979,   -1643.2979

(Intercept)  Continuous      Binary             
     -3.086       1.082       2.090       1.240 
(Intercept)  Continuous      Binary             
     -3.088       1.082       2.091       1.242 
attr(,"variance proportions")
Residual          
  0.2242   0.7758 
         (Intercept) Continuous Binary       
Estimate     -3.0857     1.0817 2.0899 1.2398
SE            0.3668     0.1354 0.2614 0.3034
Time          4.8,         10.9. Max ll:   -1637.9652,   -1637.9651

(Intercept)  Continuous      Binary             
     -2.962       1.050       1.794       1.221 
(Intercept)  Continuous      Binary             
     -2.959       1.049       1.792       1.218 
attr(,"variance proportions")
Residual          
  0.2283   0.7717 
         (Intercept) Continuous Binary       
Estimate     -2.9625     1.0502 1.7941 1.2209
SE            0.3816     0.1411 0.2455 0.3303
Time          9.5,         11.6. Max ll:   -1626.8064,   -1626.8063

(Intercept)  Continuous      Binary             
     -2.932       1.007       2.074       1.009 
(Intercept)  Continuous      Binary             
     -2.930       1.006       2.074       1.008 
attr(,"variance proportions")
Residual          
  0.2673   0.7327 
         (Intercept) Continuous Binary       
Estimate     -2.9317      1.007 2.0743 1.0091
SE            0.3139      0.114 0.2335 0.2877
Time          9.4,         11.6. Max ll:   -1624.0941,   -1624.0939

(Intercept)  Continuous      Binary             
    -2.8140      0.9323      1.9071      0.7796 
(Intercept)  Continuous      Binary             
    -2.8165      0.9331      1.9086      0.7823 
attr(,"variance proportions")
Residual          
  0.3138   0.6862 
         (Intercept) Continuous Binary       
Estimate     -2.8140     0.9323 1.9071 0.7796
SE            0.2664     0.0942 0.1916 0.2692
Time          5.7,          6.1. Max ll:   -1582.0835,   -1582.0837

(Intercept)  Continuous      Binary             
     -3.614       1.133       2.193       1.512 
(Intercept)  Continuous      Binary             
     -3.621       1.135       2.198       1.517 
attr(,"variance proportions")
Residual          
  0.1799   0.8201 
         (Intercept) Continuous Binary       
Estimate     -3.6136     1.1326 2.1933 1.5117
SE            0.5484     0.1766 0.3428 0.3712
Time          6.5,          6.8. Max ll:   -1512.1259,   -1512.1256

(Intercept)  Continuous      Binary             
    -2.8741      0.9475      1.9688      0.9152 
(Intercept)  Continuous      Binary             
    -2.8739      0.9474      1.9686      0.9149 
attr(,"variance proportions")
Residual          
   0.286    0.714 
         (Intercept) Continuous Binary       
Estimate     -2.8741     0.9475 1.9688 0.9152
SE            0.2992     0.1050 0.2144 0.2901
Time          9.4,          8.3. Max ll:   -1577.6617,   -1577.6617

(Intercept)  Continuous      Binary             
     -2.899       1.033       1.859       1.081 
(Intercept)  Continuous      Binary             
     -2.885       1.028       1.849       1.068 
attr(,"variance proportions")
Residual          
  0.2558   0.7442 
         (Intercept) Continuous Binary       
Estimate     -2.8988     1.0330 1.8589 1.0806
SE            0.3314     0.1237 0.2272 0.3046
Time          6.2,          7.7. Max ll:   -1630.5539,   -1630.5533

(Intercept)  Continuous      Binary             
     -3.205       1.057       2.110       1.293 
(Intercept)  Continuous      Binary             
     -3.200       1.056       2.107       1.290 
attr(,"variance proportions")
Residual          
  0.2159   0.7841 
         (Intercept) Continuous Binary       
Estimate     -3.2047     1.0571 2.1097 1.2932
SE            0.4204     0.1437 0.2902 0.3346
Time          5.2,          7.7. Max ll:   -1585.6072,   -1585.6071

(Intercept)  Continuous      Binary             
    -2.9610      0.9663      2.0263      1.1579 
(Intercept)  Continuous      Binary             
    -2.9718      0.9701      2.0319      1.1672 
attr(,"variance proportions")
Residual          
  0.2374   0.7626 
         (Intercept) Continuous Binary       
Estimate     -2.9610     0.9663 2.0263 1.1579
SE            0.3519     0.1206 0.2523 0.3122
Time          9.5,          8.9. Max ll:   -1643.4114,   -1643.4113


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  |                                                                            
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label: sim_study_simple_w
(Intercept)      Binary                         
    -2.6481      3.6234      0.4520     -0.3163 
(Intercept)      Binary                         
     -2.649       3.625       0.455      -0.318 
attr(,"variance proportions")
Residual                   
  0.3027   0.4771   0.2202 
         (Intercept) Binary               
Estimate     -2.6481 3.6234 0.4520 -0.3163
SE            0.2373 0.3287 0.2636  0.3402
Time         12.6,         12.5. Max ll:   -2873.6880,   -2873.6880

(Intercept)      Binary                         
  -3.157781    4.405151    0.947818   -0.008592 
(Intercept)      Binary                         
   -3.14096     4.38187     0.93442    -0.02373 
attr(,"variance proportions")
Residual                   
  0.2211   0.5629   0.2159 
         (Intercept) Binary                 
Estimate      -3.158 4.4052 0.9478 -0.008592
SE             0.374 0.5282 0.3056  0.383326
Time         10.1,          5.6. Max ll:   -2779.6472,   -2779.6490

(Intercept)      Binary                         
    -2.8414      3.7621      0.2716      0.2028 
(Intercept)      Binary                         
    -2.8445      3.7662      0.2751      0.2048 
attr(,"variance proportions")
Residual                   
  0.2822   0.3715   0.3463 
         (Intercept) Binary              
Estimate     -2.8414 3.7621 0.2716 0.2028
SE            0.2705 0.3621 0.3149 0.2793
Time         11.3,         11.2. Max ll:   -2711.1825,   -2711.1823

(Intercept)      Binary                         
    -2.6060      3.5515      0.2742     -0.2248 
(Intercept)      Binary                         
    -2.6100      3.5565      0.2771     -0.2187 
attr(,"variance proportions")
Residual                   
  0.3202   0.4225   0.2573 
         (Intercept) Binary               
Estimate     -2.6060 3.5515 0.2742 -0.2248
SE            0.2173 0.3002 0.2659  0.3035
Time          9.9,         16.5. Max ll:   -2808.3757,   -2808.3754

(Intercept)      Binary                         
   -2.88444     4.02697     0.63506    -0.01787 
(Intercept)      Binary                         
   -2.88579     4.02873     0.63836    -0.02096 
attr(,"variance proportions")
Residual                   
  0.2582   0.4889   0.2529 
         (Intercept) Binary                
Estimate     -2.8844 4.0270 0.6351 -0.01787
SE            0.2954 0.4169 0.2873  0.33201
Time         22.0,         21.0. Max ll:   -2806.5809,   -2806.5807

(Intercept)      Binary                         
    -3.4243      4.5947      1.0178      0.3087 
(Intercept)      Binary                         
    -3.4331      4.6061      1.0251      0.3133 
attr(,"variance proportions")
Residual                   
  0.1940   0.5407   0.2654 
         (Intercept) Binary              
Estimate     -3.4243 4.5947 1.0178 0.3087
SE            0.4333 0.5856 0.3239 0.3606
Time          6.8,          6.9. Max ll:   -2709.5472,   -2709.5473

(Intercept)      Binary                         
   -2.92890     3.87255     0.63523     0.05416 
(Intercept)      Binary                         
   -2.93490     3.88068     0.64162     0.05832 
attr(,"variance proportions")
Residual                   
  0.2526   0.4797   0.2677 
         (Intercept) Binary               
Estimate     -2.9289 3.8725 0.6352 0.05416
SE            0.3004 0.4035 0.2926 0.32011
Time         28.8,         22.3. Max ll:   -2823.8290,   -2823.8293

(Intercept)      Binary                         
    -2.5750      3.3585      0.2541     -0.4181 
(Intercept)      Binary                         
    -2.5727      3.3552      0.2544     -0.4260 
attr(,"variance proportions")
Residual                   
  0.3398   0.4382   0.2219 
         (Intercept) Binary               
Estimate     -2.5750  3.359 0.2541 -0.4181
SE            0.2284  0.304 0.2815  0.3570
Time          7.4,         22.4. Max ll:   -2753.4426,   -2753.4433

(Intercept)      Binary                         
    -2.5207      3.4087      0.2612     -0.5451 
(Intercept)      Binary                         
    -2.5101      3.3956      0.2535     -0.5687 
attr(,"variance proportions")
Residual                   
  0.3503   0.4513   0.1984 
         (Intercept) Binary               
Estimate     -2.5207 3.4087 0.2612 -0.5451
SE            0.1989 0.2725 0.2522  0.3442
Time         15.4,          5.2. Max ll:   -2800.0163,   -2800.0188

(Intercept)      Binary                         
   -2.76572     3.66404     0.25859    -0.08975 
(Intercept)      Binary                         
   -2.76612     3.66467     0.25830    -0.08848 
attr(,"variance proportions")
Residual                   
  0.3115   0.4033   0.2851 
         (Intercept) Binary                
Estimate     -2.7657 3.6640 0.2586 -0.08975
SE            0.2474 0.3326 0.2921  0.30655
Time         19.0,         18.2. Max ll:   -2641.9372,   -2641.9372

(Intercept)      Binary                         
    -3.0253      4.1490      0.5587      0.3516 
(Intercept)      Binary                         
    -3.0274      4.1525      0.5625      0.3510 
attr(,"variance proportions")
Residual                   
  0.2395   0.4203   0.3402 
         (Intercept) Binary              
Estimate     -3.0253 4.1490 0.5587 0.3516
SE            0.3187 0.4416 0.3128 0.2896
Time         13.6,          8.0. Max ll:   -2767.1642,   -2767.1643

(Intercept)      Binary                         
   -2.72371     3.51815     0.24602    -0.08211 
(Intercept)      Binary                         
   -2.71728     3.50907     0.24167    -0.09279 
attr(,"variance proportions")
Residual                   
  0.3140   0.3998   0.2862 
         (Intercept) Binary                
Estimate     -2.7237 3.5181 0.2460 -0.08211
SE            0.2506 0.3282 0.3004  0.30630
Time         15.3,         12.9. Max ll:   -2719.1933,   -2719.1929

(Intercept)      Binary                         
   -2.98203     3.88358     0.65442    -0.01735 
(Intercept)      Binary                         
  -2.993169    3.898462    0.665999   -0.009816 
attr(,"variance proportions")
Residual                   
  0.2540   0.4944   0.2515 
         (Intercept) Binary                
Estimate     -2.9820 3.8836 0.6544 -0.01735
SE            0.3249 0.4289 0.3028  0.35886
Time         18.7,         20.5. Max ll:   -2716.4607,   -2716.4600

(Intercept)      Binary                         
    -2.7699      3.8082      0.6410     -0.3775 
(Intercept)      Binary                         
    -2.7685      3.8063      0.6389     -0.3771 
attr(,"variance proportions")
Residual                   
  0.2793   0.5291   0.1916 
         (Intercept) Binary               
Estimate     -2.7699 3.8082 0.6410 -0.3775
SE            0.2573 0.3571 0.2573  0.3727
Time         27.4,         22.4. Max ll:   -2842.7168,   -2842.7169

(Intercept)      Binary                         
    -2.6527      3.5657      0.2886     -0.2409 
(Intercept)      Binary                         
    -2.6601      3.5751      0.2956     -0.2308 
attr(,"variance proportions")
Residual                   
  0.3187   0.4283   0.2530 
         (Intercept) Binary               
Estimate     -2.6527 3.5657 0.2886 -0.2409
SE            0.2326 0.3179 0.2824  0.3152
Time         19.9,         17.1. Max ll:   -2737.0265,   -2737.0259

(Intercept)      Binary                         
    -2.9122      3.8533      0.6993     -0.1953 
(Intercept)      Binary                         
    -2.9177      3.8607      0.7049     -0.1915 
attr(,"variance proportions")
Residual                   
  0.2598   0.5257   0.2145 
         (Intercept) Binary               
Estimate      -2.912 3.8533 0.6993 -0.1953
SE             0.292 0.3909 0.2772  0.3571
Time         20.6,         20.9. Max ll:   -2789.6682,   -2789.6678

(Intercept)      Binary                         
    -2.4991      3.3502      0.1687     -0.4777 
(Intercept)      Binary                         
    -2.5001      3.3515      0.1724     -0.4812 
attr(,"variance proportions")
Residual                   
  0.3564   0.4234   0.2202 
         (Intercept) Binary               
Estimate     -2.4991  3.350 0.1687 -0.4777
SE            0.1976  0.271 0.2610  0.3292
Time         18.2,         15.1. Max ll:   -2803.0914,   -2803.0911

(Intercept)      Binary                         
   -3.16173     4.24362     0.88453     0.02605 
(Intercept)      Binary                         
   -3.17318     4.25916     0.89426     0.03469 
attr(,"variance proportions")
Residual                   
  0.2232   0.5458   0.2311 
         (Intercept) Binary               
Estimate     -3.1617 4.2436 0.8845 0.02605
SE            0.3873 0.5239 0.3177 0.39778
Time         23.1,         16.8. Max ll:   -2709.9614,   -2709.9611

(Intercept)      Binary                         
     -3.625       4.897       1.278       0.269 
(Intercept)      Binary                         
    -3.6054      4.8702      1.2638      0.2581 
attr(,"variance proportions")
Residual                   
  0.1714   0.6067   0.2219 
         (Intercept) Binary              
Estimate     -3.6252 4.8970 1.2777 0.2690
SE            0.5914 0.8001 0.3941 0.4623
Time         11.8,          7.3. Max ll:   -2731.5355,   -2731.5334

(Intercept)      Binary                         
    -3.2488      4.3347      0.9023      0.1602 
(Intercept)      Binary                         
    -3.2375      4.3194      0.8935      0.1503 
attr(,"variance proportions")
Residual                   
  0.2171   0.5306   0.2523 
         (Intercept) Binary              
Estimate     -3.2488 4.3347 0.9023 0.1602
SE            0.3619 0.4871 0.2922 0.3419
Time         20.5,         17.8. Max ll:   -2719.6435,   -2719.6428

(Intercept)      Binary                         
    -4.4644      6.1794      1.7044      0.9144 
(Intercept)      Binary                         
    -4.5031      6.2330      1.7238      0.9341 
attr(,"variance proportions")
Residual                   
  0.1093   0.6126   0.2781 
         (Intercept) Binary              
Estimate     -4.4644  6.179 1.7044 0.9144
SE            0.7713  1.073 0.3928 0.4307
Time         14.3,         16.8. Max ll:   -2702.0254,   -2702.0269

(Intercept)      Binary                         
    -2.8263      3.6975      0.3116      0.1569 
(Intercept)      Binary                         
    -2.8349      3.7086      0.3201      0.1640 
attr(,"variance proportions")
Residual                   
  0.2813   0.3874   0.3314 
         (Intercept) Binary              
Estimate     -2.8263 3.6975 0.3116 0.1569
SE            0.2705 0.3581 0.3099 0.2873
Time         25.8,         10.9. Max ll:   -2743.2777,   -2743.2771

(Intercept)      Binary                         
    -3.0707      4.0870      0.9175     -0.1502 
(Intercept)      Binary                         
    -3.0505      4.0601      0.9016     -0.1716 
attr(,"variance proportions")
Residual                   
  0.2322   0.5721   0.1956 
         (Intercept) Binary               
Estimate     -3.0707 4.0870 0.9175 -0.1502
SE            0.3765 0.5045 0.3152  0.4166
Time         18.2,         25.0. Max ll:   -2832.3663,   -2832.3646

(Intercept)      Binary                         
    -3.1727      4.1588      0.6502      0.3095 
(Intercept)      Binary                         
    -3.1702      4.1560      0.6473      0.3075 
attr(,"variance proportions")
Residual                   
  0.2342   0.4474   0.3185 
         (Intercept) Binary              
Estimate     -3.1727  4.159 0.6502 0.3095
SE            0.3616  0.477 0.3218 0.3243
Time          5.4,          6.8. Max ll:   -2655.4698,   -2655.4703

(Intercept)      Binary                         
    -3.5266      4.7762      1.0314      0.5086 
(Intercept)      Binary                         
    -3.5291      4.7796      1.0341      0.5088 
attr(,"variance proportions")
Residual                   
  0.1826   0.5136   0.3038 
         (Intercept) Binary              
Estimate     -3.5266 4.7762 1.0314 0.5086
SE            0.4884 0.6666 0.3525 0.3706
Time         15.8,         17.7. Max ll:   -2710.7652,   -2710.7651

(Intercept)      Binary                         
    -2.5484      3.4448      0.1328     -0.2769 
(Intercept)      Binary                         
    -2.5481      3.4451      0.1297     -0.2737 
attr(,"variance proportions")
Residual                   
  0.3449   0.3927   0.2623 
         (Intercept) Binary               
Estimate     -2.5484  3.445 0.1328 -0.2769
SE            0.2035  0.280 0.2696  0.3055
Time         14.5,         10.4. Max ll:   -2782.1826,   -2782.1829

(Intercept)      Binary                         
    -2.6879      3.5793      0.4797     -0.3159 
(Intercept)      Binary                         
    -2.6967      3.5912      0.4918     -0.3119 
attr(,"variance proportions")
Residual                   
  0.2970   0.4856   0.2174 
         (Intercept) Binary               
Estimate     -2.6879 3.5793 0.4797 -0.3159
SE            0.2409 0.3252 0.2664  0.3408
Time         37.2,          6.6. Max ll:   -2857.1726,   -2857.1719

(Intercept)      Binary                         
    -3.5197      4.5932      1.0615      0.5975 
(Intercept)      Binary                         
    -3.5345      4.6120      1.0708      0.6089 
attr(,"variance proportions")
Residual                   
  0.1737   0.5069   0.3194 
         (Intercept) Binary              
Estimate     -3.5197 4.5932 1.0615 0.5975
SE            0.4972 0.6534 0.3616 0.3570
Time         26.2,         22.7. Max ll:   -2849.6794,   -2849.6787

(Intercept)      Binary                         
   -2.99804     3.99226     0.76219     0.01046 
(Intercept)      Binary                         
  -2.991901    3.984008    0.755578    0.005773 
attr(,"variance proportions")
Residual                   
  0.2419   0.5149   0.2433 
         (Intercept) Binary               
Estimate     -2.9980 3.9923 0.7622 0.01046
SE            0.3101 0.4181 0.2843 0.33903
Time          5.7,          6.3. Max ll:   -2821.0137,   -2821.0146

(Intercept)      Binary                         
    -2.9105      3.7849      0.7159     -0.5208 
(Intercept)      Binary                         
    -2.9180      3.7949      0.7222     -0.5116 
attr(,"variance proportions")
Residual                   
  0.2733   0.5628   0.1639 
         (Intercept) Binary               
Estimate     -2.9105 3.7849 0.7159 -0.5208
SE            0.3016 0.3961 0.2810  0.4445
Time         23.5,         23.5. Max ll:   -2654.8796,   -2654.8795

(Intercept)      Binary                         
   -3.14467     4.17722     0.89514     0.09991 
(Intercept)      Binary                         
   -3.13957     4.16902     0.89418     0.08695 
attr(,"variance proportions")
Residual                   
  0.2205   0.5391   0.2405 
         (Intercept) Binary               
Estimate     -3.1447 4.1772 0.8951 0.09991
SE            0.3697 0.4967 0.3087 0.36337
Time          9.6,         13.8. Max ll:   -2801.1212,   -2801.1213

(Intercept)      Binary                         
    -3.4530      4.6777      1.0444      0.3239 
(Intercept)      Binary                         
    -3.4527      4.6770      1.0457      0.3223 
attr(,"variance proportions")
Residual                   
  0.1914   0.5445   0.2641 
         (Intercept) Binary              
Estimate     -3.4530 4.6777 1.0444 0.3239
SE            0.4704 0.6434 0.3501 0.3736
Time         38.8,         17.2. Max ll:   -2697.2461,   -2697.2459

(Intercept)      Binary                         
    -3.5680      4.4687      1.1718      0.3754 
(Intercept)      Binary                         
    -3.5541      4.4517      1.1620      0.3664 
attr(,"variance proportions")
Residual                   
  0.1773   0.5668   0.2558 
         (Intercept) Binary              
Estimate     -3.5680 4.4687 1.1718 0.3754
SE            0.5209 0.6555 0.3604 0.4087
Time          9.9,          8.3. Max ll:   -2762.9871,   -2762.9884

(Intercept)      Binary                         
    -3.0594      3.9578      0.8123     -0.3610 
(Intercept)      Binary                         
    -3.0444      3.9381      0.7969     -0.3681 
attr(,"variance proportions")
Residual                   
  0.2557   0.5673   0.1770 
         (Intercept) Binary               
Estimate     -3.0594 3.9578 0.8123 -0.3610
SE            0.3263 0.4254 0.2867  0.4105
Time         22.1,         26.4. Max ll:   -2623.0103,   -2623.0092

(Intercept)      Binary                         
   -2.92019     3.99500     0.60893    -0.08805 
(Intercept)      Binary                         
   -2.91969     3.99520     0.60793    -0.08754 
attr(,"variance proportions")
Residual                   
  0.2665   0.4894   0.2441 
         (Intercept) Binary                
Estimate     -2.9202 3.9950 0.6089 -0.08805
SE            0.2884 0.3967 0.2828  0.33062
Time         13.3,         14.0. Max ll:   -2741.6145,   -2741.6146

(Intercept)      Binary                         
    -3.0191      4.1467      0.6068      0.2539 
(Intercept)      Binary                         
    -3.0158      4.1426      0.6036      0.2516 
attr(,"variance proportions")
Residual                   
  0.2430   0.4444   0.3125 
         (Intercept) Binary              
Estimate     -3.0191 4.1467 0.6068 0.2539
SE            0.3405 0.4703 0.3296 0.3177
Time         19.7,         11.6. Max ll:   -2754.9105,   -2754.9104

(Intercept)      Binary                         
    -3.1113      3.9482      0.8101     -0.1061 
(Intercept)      Binary                         
   -3.14104     3.98559     0.83164    -0.07186 
attr(,"variance proportions")
Residual                   
  0.2365   0.5433   0.2201 
         (Intercept) Binary               
Estimate     -3.1113 3.9482 0.8101 -0.1061
SE            0.3392 0.4349 0.2878  0.3809
Time         11.6,         16.9. Max ll:   -2686.3897,   -2686.3850

(Intercept)      Binary                         
    -2.8393      3.7168      0.5725     -0.1982 
(Intercept)      Binary                         
    -2.8454      3.7248      0.5783     -0.1917 
attr(,"variance proportions")
Residual                   
  0.2771   0.4941   0.2288 
         (Intercept) Binary               
Estimate     -2.8393 3.7168 0.5725 -0.1982
SE            0.2769 0.3665 0.2774  0.3508
Time         24.1,         21.4. Max ll:   -2757.3076,   -2757.3083

(Intercept)      Binary                         
   -3.10187     4.13678     0.78083     0.02054 
(Intercept)      Binary                         
  -3.087071    4.116978    0.768161    0.007932 
attr(,"variance proportions")
Residual                   
  0.2402   0.5178   0.2421 
         (Intercept) Binary               
Estimate     -3.1019 4.1368 0.7808 0.02054
SE            0.3515 0.4708 0.3023 0.36275
Time         20.0,         17.8. Max ll:   -2712.5176,   -2712.5161

(Intercept)      Binary                         
    -3.7821      5.1336      1.3021      0.4485 
(Intercept)      Binary                         
     -3.765       5.111       1.291       0.440 
attr(,"variance proportions")
Residual                   
  0.1616   0.5875   0.2509 
         (Intercept) Binary              
Estimate     -3.7821 5.1336 1.3021 0.4485
SE            0.6317 0.8624 0.4021 0.4564
Time         25.1,         19.6. Max ll:   -2650.1462,   -2650.1477

(Intercept)      Binary                         
   -3.19204     4.29838     0.94724     0.05537 
(Intercept)      Binary                         
   -3.18171     4.28520     0.93833     0.04749 
attr(,"variance proportions")
Residual                   
  0.2172   0.5551   0.2277 
         (Intercept) Binary               
Estimate     -3.1920 4.2984 0.9472 0.05537
SE            0.4098 0.5552 0.3306 0.40000
Time         25.9,          8.1. Max ll:   -2768.4679,   -2768.4698

(Intercept)      Binary                         
   -3.00350     4.01653     0.65044     0.05291 
(Intercept)      Binary                         
   -2.97403     3.97999     0.62111     0.02973 
attr(,"variance proportions")
Residual                   
  0.2570   0.4783   0.2647 
         (Intercept) Binary               
Estimate      -3.004  4.017 0.6504 0.05291
SE             0.331  0.448 0.3142 0.33943
Time         18.8,         11.0. Max ll:   -2703.6492,   -2703.6541

(Intercept)      Binary                         
     -4.965       6.621       1.813       1.373 
(Intercept)      Binary                         
     -4.993       6.659       1.824       1.387 
attr(,"variance proportions")
Residual                   
 0.08928  0.55350  0.35722 
         (Intercept) Binary              
Estimate      -4.965  6.621 1.8126 1.3731
SE             1.110  1.485 0.5114 0.4926
Time         11.9,          7.0. Max ll:   -2704.0546,   -2704.0532

(Intercept)      Binary                         
    -3.0587      4.0983      0.5858      0.2205 
(Intercept)      Binary                         
    -3.0622      4.1031      0.5896      0.2215 
attr(,"variance proportions")
Residual                   
  0.2468   0.4451   0.3080 
         (Intercept) Binary              
Estimate     -3.0587 4.0983 0.5858 0.2205
SE            0.3246 0.4398 0.3075 0.3139
Time         27.7,         22.7. Max ll:   -2681.1876,   -2681.1873

(Intercept)      Binary                         
   -2.99664     3.90846     0.60526     0.08917 
(Intercept)      Binary                         
   -2.99940     3.91291     0.61028     0.08726 
attr(,"variance proportions")
Residual                   
  0.2543   0.4682   0.2775 
         (Intercept) Binary               
Estimate      -2.997 3.9085 0.6053 0.08917
SE             0.325 0.4298 0.3139 0.33125
Time         19.4,         15.3. Max ll:   -2697.4757,   -2697.4757

(Intercept)      Binary                         
   -2.90238     4.00198     0.62882    -0.01734 
(Intercept)      Binary                         
   -2.91152     4.01423     0.63754    -0.01059 
attr(,"variance proportions")
Residual                   
  0.2576   0.4874   0.2549 
         (Intercept) Binary                
Estimate     -2.9024 4.0020 0.6288 -0.01734
SE            0.2912 0.4056 0.2874  0.32088
Time         11.7,         17.7. Max ll:   -2788.8708,   -2788.8692

(Intercept)      Binary                         
    -2.7045      3.6774      0.2285     -0.1323 
(Intercept)      Binary                         
    -2.7068      3.6805      0.2301     -0.1285 
attr(,"variance proportions")
Residual                   
  0.3187   0.4011   0.2802 
         (Intercept) Binary               
Estimate     -2.7045 3.6774 0.2285 -0.1323
SE            0.2377 0.3276 0.2918  0.3041
Time         24.0,         19.6. Max ll:   -2663.0191,   -2663.0192

(Intercept)      Binary                         
    -2.8175      3.6386      0.5459     -0.4015 
(Intercept)      Binary                         
    -2.8297      3.6546      0.5579     -0.3884 
attr(,"variance proportions")
Residual                   
   0.292    0.510    0.198 
         (Intercept) Binary               
Estimate      -2.817 3.6386 0.5459 -0.4015
SE             0.268 0.3509 0.2717  0.3838
Time         21.0,         22.4. Max ll:   -2683.9449,   -2683.9442

(Intercept)      Binary                         
    -2.7614      3.6960      0.4532     -0.2251 
(Intercept)      Binary                         
    -2.7759      3.7157      0.4692     -0.2115 
attr(,"variance proportions")
Residual                   
  0.2934   0.4691   0.2375 
         (Intercept) Binary               
Estimate     -2.7614 3.6960 0.4532 -0.2251
SE            0.2583 0.3502 0.2828  0.3323
Time         25.5,         19.2. Max ll:   -2745.8375,   -2745.8383

(Intercept)      Binary                         
    -3.1535      4.2105      0.7249      0.2730 
(Intercept)      Binary                         
    -3.1785      4.2440      0.7453      0.2929 
attr(,"variance proportions")
Residual                   
  0.2248   0.4738   0.3014 
         (Intercept) Binary              
Estimate     -3.1535  4.210 0.7249 0.2730
SE            0.3599  0.484 0.3144 0.3315
Time         27.7,         18.9. Max ll:   -2711.1002,   -2711.0966


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  ordinary text without R code


label: clean_pre_loading (with options) 
List of 1
 $ echo: logi FALSE


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  |...............................................                       |  67%
  ordinary text without R code


label: loading_assign_sim_dat

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  ordinary text without R code


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  |................................................                      |  69%
label: loading_one_dat (with options) 
List of 1
 $ cache: num 1


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  |.................................................                     |  69%
  ordinary text without R code


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  |.................................................                     |  70%
label: loading_show_res

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  |.................................................                     |  71%
  ordinary text without R code


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  |..................................................                    |  71%
label: pre_loadings_pl (with options) 
List of 1
 $ echo: logi FALSE


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  |..................................................                    |  72%
  ordinary text without R code


  |                                                                            
  |...................................................                   |  72%
label: loadings_pl (with options) 
List of 2
 $ cache  : num 1
 $ message: logi TRUE


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  ordinary text without R code


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  |....................................................                  |  74%
label: show_loadings_pl_show

  ordinary text without R code


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  |....................................................                  |  75%
label: loadings_nleq_pl (with options) 
List of 2
 $ cache  : num 1
 $ message: logi TRUE


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  ordinary text without R code


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label: show_loadings_nleq_pl

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  ordinary text without R code


label: loadings_sim_study
         (Intercept) Binary                                           
Estimate      -2.053  4.193 -0.2298 0.9849 0.8875 -0.5781 0.6671 -1.19
Truth         -2.000  4.000 -0.3942 1.1274 1.0000 -0.5058 0.6496 -1.00
Time         72.1. Max ll:   -4395.5206

         (Intercept) Binary                                            
Estimate      -2.041  4.122 -0.2802 0.9964 0.9152 -0.6492 0.6032 -1.222
Truth         -2.000  4.000 -0.3942 1.1274 1.0000 -0.5058 0.6496 -1.000
Time         76.8. Max ll:   -4292.2899

         (Intercept) Binary                                          
Estimate      -1.954  3.957 -0.4962 1.125 1.064 -0.5981 0.6764 -1.144
Truth         -2.000  4.000 -0.3942 1.127 1.000 -0.5058 0.6496 -1.000
Time         73.8. Max ll:   -4326.5815

         (Intercept) Binary                                           
Estimate      -2.081   4.21 -0.4313 1.196 1.079 -0.3455 0.6563 -0.9428
Truth         -2.000   4.00 -0.3942 1.127 1.000 -0.5058 0.6496 -1.0000
Time         74.2. Max ll:   -4363.1704

         (Intercept) Binary                                          
Estimate      -1.761  3.673 -0.7327 1.320 1.168 -0.7034 0.8034 -1.002
Truth         -2.000  4.000 -0.3942 1.127 1.000 -0.5058 0.6496 -1.000
Time         70.6. Max ll:   -4427.5856

         (Intercept) Binary                                          
Estimate      -1.912  3.818 -0.3517 1.174 0.8831 -0.8667 0.8055 -1.11
Truth         -2.000  4.000 -0.3942 1.127 1.0000 -0.5058 0.6496 -1.00
Time         71.5. Max ll:   -4319.9260

         (Intercept) Binary                                          
Estimate      -1.855  3.539 -0.5836 1.320 1.031 -0.6889 0.6438 -1.224
Truth         -2.000  4.000 -0.3942 1.127 1.000 -0.5058 0.6496 -1.000
Time         73.7. Max ll:   -4473.3598

         (Intercept) Binary                                           
Estimate      -1.972  3.827 -0.4241 1.115 1.033 -0.3852 0.5416 -0.8847
Truth         -2.000  4.000 -0.3942 1.127 1.000 -0.5058 0.6496 -1.0000
Time         63.0. Max ll:   -4392.1278

         (Intercept) Binary                                          
Estimate      -1.758  3.655 -0.6797 1.208 1.142 -0.7824 0.7729 -1.123
Truth         -2.000  4.000 -0.3942 1.127 1.000 -0.5058 0.6496 -1.000
Time         76.2. Max ll:   -4402.6644

         (Intercept) Binary                                            
Estimate      -2.071  4.072 -0.4300 1.271 0.9176 -0.2868 0.5098 -0.8079
Truth         -2.000  4.000 -0.3942 1.127 1.0000 -0.5058 0.6496 -1.0000
Time         75.6. Max ll:   -4290.3400

         (Intercept) Binary                                           
Estimate       -1.88  3.936 -0.4741 1.124 0.9737 -0.6571 0.7954 -1.051
Truth          -2.00  4.000 -0.3942 1.127 1.0000 -0.5058 0.6496 -1.000
Time         74.4. Max ll:   -4392.1055

         (Intercept) Binary                                          
Estimate      -2.112  4.097 -0.4200 1.251 1.094 -0.5048 0.6629 -1.112
Truth         -2.000  4.000 -0.3942 1.127 1.000 -0.5058 0.6496 -1.000
Time        100.8. Max ll:   -4316.2796

         (Intercept) Binary                                           
Estimate       -2.05   3.98 -0.4284 1.075 0.9944 -0.4427 0.5961 -1.054
Truth          -2.00   4.00 -0.3942 1.127 1.0000 -0.5058 0.6496 -1.000
Time         76.3. Max ll:   -4308.1808

         (Intercept) Binary                                           
Estimate      -2.067   4.29 -0.2698 1.121 0.9817 -0.5124 0.5458 -1.139
Truth         -2.000   4.00 -0.3942 1.127 1.0000 -0.5058 0.6496 -1.000
Time         78.6. Max ll:   -4393.9034

         (Intercept) Binary                                           
Estimate      -2.032  4.117 -0.3868 1.182 1.003 -0.3404 0.5515 -0.7907
Truth         -2.000  4.000 -0.3942 1.127 1.000 -0.5058 0.6496 -1.0000
Time         73.7. Max ll:   -4337.5184

         (Intercept) Binary                                            
Estimate      -1.816  3.584 -0.4684 1.081 0.8506 -0.6493 0.7018 -0.9337
Truth         -2.000  4.000 -0.3942 1.127 1.0000 -0.5058 0.6496 -1.0000
Time         75.3. Max ll:   -4390.6236

         (Intercept) Binary                                          
Estimate      -2.171  4.325 -0.2060 1.008 1.038 -0.5262 0.6707 -1.224
Truth         -2.000  4.000 -0.3942 1.127 1.000 -0.5058 0.6496 -1.000
Time         77.5. Max ll:   -4380.6590

         (Intercept) Binary                                            
Estimate      -1.852  3.707 -0.5354 1.181 0.9674 -0.6312 0.6697 -0.9591
Truth         -2.000  4.000 -0.3942 1.127 1.0000 -0.5058 0.6496 -1.0000
Time         74.5. Max ll:   -4321.1143

         (Intercept) Binary                                          
Estimate      -1.837  3.739 -0.3843 1.149 0.8793 -0.9356 0.6531 -1.37
Truth         -2.000  4.000 -0.3942 1.127 1.0000 -0.5058 0.6496 -1.00
Time        122.7. Max ll:   -4430.8984

         (Intercept) Binary                                           
Estimate      -2.048  4.304 -0.3624 1.118 0.9561 -0.5290 0.6725 -1.114
Truth         -2.000  4.000 -0.3942 1.127 1.0000 -0.5058 0.6496 -1.000
Time         70.9. Max ll:   -4294.5649

         (Intercept) Binary                                           
Estimate      -1.934  3.961 -0.3022 1.123 0.8777 -0.6057 0.5885 -1.022
Truth         -2.000  4.000 -0.3942 1.127 1.0000 -0.5058 0.6496 -1.000
Time         86.1. Max ll:   -4399.1707

         (Intercept) Binary                                          
Estimate      -1.958  3.749 -0.5025 1.106 1.073 -0.5677 0.6526 -1.107
Truth         -2.000  4.000 -0.3942 1.127 1.000 -0.5058 0.6496 -1.000
Time         88.3. Max ll:   -4356.5822

         (Intercept) Binary                                            
Estimate      -2.061  4.043 -0.2275 0.9665 0.9189 -0.6237 0.7219 -1.172
Truth         -2.000  4.000 -0.3942 1.1274 1.0000 -0.5058 0.6496 -1.000
Time         76.4. Max ll:   -4373.2042

         (Intercept) Binary                                          
Estimate      -1.873   3.85 -0.5279 1.108 1.064 -0.6430 0.5668 -1.056
Truth         -2.000   4.00 -0.3942 1.127 1.000 -0.5058 0.6496 -1.000
Time         77.2. Max ll:   -4309.0397

         (Intercept) Binary                                        
Estimate      -2.071  4.259 -0.3689 1.177 1.01 -0.4911 0.5890 -1.15
Truth         -2.000  4.000 -0.3942 1.127 1.00 -0.5058 0.6496 -1.00
Time         87.8. Max ll:   -4347.8675

         (Intercept) Binary                                          
Estimate      -1.693  3.509 -0.8653 1.390 1.132 -0.9271 0.8370 -1.208
Truth         -2.000  4.000 -0.3942 1.127 1.000 -0.5058 0.6496 -1.000
Time         72.8. Max ll:   -4375.8549

         (Intercept) Binary                                          
Estimate      -2.042  4.328 -0.2748 1.084 1.031 -0.6428 0.7044 -1.186
Truth         -2.000  4.000 -0.3942 1.127 1.000 -0.5058 0.6496 -1.000
Time         79.3. Max ll:   -4363.7035

         (Intercept) Binary                                           
Estimate      -1.934  3.978 -0.2393 1.013 0.8374 -0.7019 0.8612 -1.111
Truth         -2.000  4.000 -0.3942 1.127 1.0000 -0.5058 0.6496 -1.000
Time         86.3. Max ll:   -4466.5790

         (Intercept) Binary                                           
Estimate      -1.986  3.864 -0.5248 1.131 1.124 -0.4335 0.6876 -0.9752
Truth         -2.000  4.000 -0.3942 1.127 1.000 -0.5058 0.6496 -1.0000
Time         90.1. Max ll:   -4373.6275

         (Intercept) Binary                                            
Estimate      -1.765  3.447 -0.5916 1.165 0.9087 -0.8215 0.7575 -0.9905
Truth         -2.000  4.000 -0.3942 1.127 1.0000 -0.5058 0.6496 -1.0000
Time         66.7. Max ll:   -4318.9956

         (Intercept) Binary                                           
Estimate      -1.769  3.596 -0.6388 1.201 0.9826 -0.8140 0.6811 -1.161
Truth         -2.000  4.000 -0.3942 1.127 1.0000 -0.5058 0.6496 -1.000
Time         74.7. Max ll:   -4338.8528

         (Intercept) Binary                                             
Estimate      -2.579  5.095 -0.1128 1.101 0.9658  0.04665 0.4953 -0.7177
Truth         -2.000  4.000 -0.3942 1.127 1.0000 -0.50580 0.6496 -1.0000
Time         84.4. Max ll:   -4224.2779

         (Intercept) Binary                                           
Estimate        -1.9  3.676 -0.4001 1.043 0.9241 -0.5890 0.6056 -1.153
Truth           -2.0  4.000 -0.3942 1.127 1.0000 -0.5058 0.6496 -1.000
Time         85.3. Max ll:   -4471.9661

         (Intercept) Binary                                           
Estimate       -2.13  4.149 -0.2481 1.079 0.9239 -0.5418 0.6210 -1.093
Truth          -2.00  4.000 -0.3942 1.127 1.0000 -0.5058 0.6496 -1.000
Time         93.6. Max ll:   -4276.7022

         (Intercept) Binary                                          
Estimate      -2.129  4.317 -0.3403 1.257 1.103 -0.5524 0.5002 -1.217
Truth         -2.000  4.000 -0.3942 1.127 1.000 -0.5058 0.6496 -1.000
Time         89.9. Max ll:   -4332.3312

         (Intercept) Binary                                            
Estimate      -2.063  4.098 -0.4089 1.212 0.9922 -0.3152 0.4545 -0.9248
Truth         -2.000  4.000 -0.3942 1.127 1.0000 -0.5058 0.6496 -1.0000
Time         90.3. Max ll:   -4339.0285

         (Intercept) Binary                                            
Estimate      -2.086  3.819 -0.4173 1.139 0.9889 -0.3475 0.5232 -0.9504
Truth         -2.000  4.000 -0.3942 1.127 1.0000 -0.5058 0.6496 -1.0000
Time         75.7. Max ll:   -4316.2749

         (Intercept) Binary                                           
Estimate      -2.191  4.254 -0.5258 1.306 1.113 -0.1926 0.5441 -0.8696
Truth         -2.000  4.000 -0.3942 1.127 1.000 -0.5058 0.6496 -1.0000
Time         75.1. Max ll:   -4268.1531

         (Intercept) Binary                                           
Estimate       -2.04   4.02 -0.2637 0.9665 0.9791 -0.9439 0.8186 -1.46
Truth          -2.00   4.00 -0.3942 1.1274 1.0000 -0.5058 0.6496 -1.00
Time         69.0. Max ll:   -4268.2668

         (Intercept) Binary                                          
Estimate      -2.045   4.11 -0.2804 1.030 0.92 -0.4226 0.6616 -0.9568
Truth         -2.000   4.00 -0.3942 1.127 1.00 -0.5058 0.6496 -1.0000
Time        119.4. Max ll:   -4388.3865

         (Intercept) Binary                                           
Estimate      -1.966  3.983 -0.3808 1.187 0.8906 -0.5510 0.5453 -1.127
Truth         -2.000  4.000 -0.3942 1.127 1.0000 -0.5058 0.6496 -1.000
Time         77.7. Max ll:   -4407.2292

         (Intercept) Binary                                           
Estimate      -2.112   4.17 -0.4109 1.236 1.028 -0.2814 0.5557 -0.8248
Truth         -2.000   4.00 -0.3942 1.127 1.000 -0.5058 0.6496 -1.0000
Time         91.5. Max ll:   -4332.2359

         (Intercept) Binary                                            
Estimate      -2.244    4.7 -0.05866 1.006 0.8425 -0.2309 0.5947 -0.824
Truth         -2.000    4.0 -0.39423 1.127 1.0000 -0.5058 0.6496 -1.000
Time         91.9. Max ll:   -4385.8508

         (Intercept) Binary                                           
Estimate      -2.009  4.154 -0.3381 1.074 1.008 -0.5128 0.7617 -0.9153
Truth         -2.000  4.000 -0.3942 1.127 1.000 -0.5058 0.6496 -1.0000
Time         89.9. Max ll:   -4385.7186

         (Intercept) Binary                                           
Estimate      -1.951  3.842 -0.5735 1.346 1.112 -0.4395 0.5613 -0.9494
Truth         -2.000  4.000 -0.3942 1.127 1.000 -0.5058 0.6496 -1.0000
Time         62.1. Max ll:   -4394.5320

         (Intercept) Binary                                           
Estimate      -2.168  4.395 -0.2106 1.091 0.9485 -0.3936 0.5238 -1.118
Truth         -2.000  4.000 -0.3942 1.127 1.0000 -0.5058 0.6496 -1.000
Time         81.0. Max ll:   -4390.1742

         (Intercept) Binary                                           
Estimate      -2.154  4.449 -0.4595 1.212 1.079 -0.1841 0.5060 -0.8118
Truth         -2.000  4.000 -0.3942 1.127 1.000 -0.5058 0.6496 -1.0000
Time         91.4. Max ll:   -4280.0757

         (Intercept) Binary                                         
Estimate      -1.837  3.533 -0.5455 1.164 1.04 -0.8977 0.6671 -1.353
Truth         -2.000  4.000 -0.3942 1.127 1.00 -0.5058 0.6496 -1.000
Time         74.9. Max ll:   -4387.5879

         (Intercept) Binary                                           
Estimate      -2.027  4.046 -0.2647 1.054 0.9153 -0.5476 0.5232 -1.092
Truth         -2.000  4.000 -0.3942 1.127 1.0000 -0.5058 0.6496 -1.000
Time         82.4. Max ll:   -4358.2662

         (Intercept) Binary                                           
Estimate      -1.958  3.946 -0.4975 1.127 1.045 -0.3939 0.6469 -0.8831
Truth         -2.000  4.000 -0.3942 1.127 1.000 -0.5058 0.6496 -1.0000
Time         76.1. Max ll:   -4400.4975


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output file: pedmod.knit.md

/usr/bin/pandoc +RTS -K512m -RTS pedmod.knit.md --to gfm --from markdown+autolink_bare_uris+tex_math_single_backslash --output README.md --atx-headers '--webtex=https://render.githubusercontent.com/render/math?math=' --template /home/boennecd/R/x86_64-pc-linux-gnu-library/4.2/rmarkdown/rmarkdown/templates/github_document/resources/default.md '--webtex=https://latex.codecogs.com/png.image?%5Cdpi%7B110%7D&space;%5Cbg_white&space;' --filter /usr/bin/pandoc-citeproc 
/usr/bin/pandoc +RTS -K512m -RTS README.md --to html4 --from gfm --output README.html --self-contained --highlight-style pygments --template /home/boennecd/R/x86_64-pc-linux-gnu-library/4.2/rmarkdown/rmarkdown/templates/github_document/resources/preview.html --variable 'github-markdown-css:/home/boennecd/R/x86_64-pc-linux-gnu-library/4.2/rmarkdown/rmarkdown/templates/github_document/resources/github.css' --metadata pagetitle=PREVIEW '--webtex=https://latex.codecogs.com/svg.image?' 

Preview created: README.html

Output created: README.md
> 
> proc.time()
   user  system elapsed 
2841.16    1.38  972.84