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[Wiki addition] : PLINK-formatted genotype data for computing reference LD #10

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bpprins opened this issue Jun 4, 2019 · 2 comments
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[Wiki addition] : PLINK-formatted genotype data for computing reference LD #10

bpprins opened this issue Jun 4, 2019 · 2 comments
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bpprins commented Jun 4, 2019 •
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Just perhaps worthwhile to add to the wiki that the necessary PLINK-formatted genotype data for computing reference LD as mentioned in the example (1000G.EUR.QC.1) can be downloaded and extracted as follows :

wget https://data.broadinstitute.org/alkesgroup/LDSCORE/1000G_Phase3_plinkfiles.tgz
tar -xvzf 1000G_Phase3_plinkfiles.tgz
@bpprins bpprins closed this as completed Jun 4, 2019
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quattro commented Jun 4, 2019

Hi @bpprins , the latest wiki page details how to do this.

Thank you.

@quattro quattro self-assigned this Jun 4, 2019
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bpprins commented Jun 5, 2019 •
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Hey @quattro, yes found it, I overlooked it I think- not very smart. Quickly closed the issue, thanks a lot again :)

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