Welcome to scGPT's documentation!
Welcome to the documentation for scGPT, a Python package for single-cell multi-omic data analysis using pretrained foundation models. This package is based on the work of scGPT (GitHub, preprint) and provides a set of functions for data preprocessing, visualization, and model evaluation.
.. toctree:: :maxdepth: 2 :caption: Getting Started: introduction installation
.. toctree:: :maxdepth: 1 :caption: Tutorials: tutorial_grn tutorial_integraion tutorial_annotation tutorial_perturbation tutorial_reference_mapping
.. toctree:: :maxdepth: 2 :caption: API Reference: scgpt
.. toctree:: :maxdepth: 2 :caption: References: faq references