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config.yaml
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config.yaml
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simulations:
myflat:
topology: 'flat 10'
simulations-number: 1
regions: [ region1, region2 ]
mutation-rates: [0.001, 0.005]
chemistries: ['P6C4', 'R103']
coverages: [40, 60, 80]
accuracies: [85, 90, 95]
length-mean: 18000
length-sd: 3000
type: 'leaves'
myrandom:
topology: 'random 10'
simulations-number: 4
regions: [ region2 ]
mutation-rates: [0.001, 0.005]
chemistries: ['P6C4', 'R103']
coverages: [40, 60, 80]
accuracies: [85, 90, 95]
length-mean: 18000
length-sd: 3000
type: 'all'
regions:
region1:
chrom: 'chr1'
start: 30000000
end: 30500000
reference: 'hg38'
region2:
chrom: 'chr2'
start: 60000000
end: 60500000
reference: 'hg38'