You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
I am trying to install tomodrgn, we are using micromamba and everything runs properly except one of the commands:
Command 21/33: tomodrgn convergence_vae output/06_vae_both_sim 49 --Apix 13.1 --random-seed 42 --final-maxima 2 --ground-truth data/10076_class*_32.mrc
Error returncode: 1
Traceback (most recent call last):
File "/home/janlevinson/micromamba/envs/tomodrgn/bin/tomodrgn", line 8, in <module>
sys.exit(main())
File "/home/janlevinson/micromamba/envs/tomodrgn/lib/python3.7/site-packages/tomodrgn/__main__.py", line 51, in main
args.func(args)
File "/home/janlevinson/micromamba/envs/tomodrgn/lib/python3.7/site-packages/tomodrgn/commands/convergence_vae.py", line 984, in main
calculate_FSCs(outdir, epochs, labels, img_size, chimerax_colors, LOG)
File "/home/janlevinson/micromamba/envs/tomodrgn/lib/python3.7/site-packages/tomodrgn/commands/convergence_vae.py", line 699, in calculate_FSCs
x, fsc_masked[cluster, i, :] = utils.calc_fsc(vol1_path, vol2_path, mask='none')
ValueError: could not broadcast input array from shape (17,) into shape (16,)
I would appreciate any inputs. I do need to look further into the paper but wanted to see if this error is a major problem or fixable.
The text was updated successfully, but these errors were encountered:
Hi,
I am trying to install tomodrgn, we are using micromamba and everything runs properly except one of the commands:
I would appreciate any inputs. I do need to look further into the paper but wanted to see if this error is a major problem or fixable.
The text was updated successfully, but these errors were encountered: