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Projet BioInfo : Demultiplexing Single Cell SplitSeq Data #41

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Remi-Gau opened this issue Dec 2, 2022 · 0 comments
Open

Projet BioInfo : Demultiplexing Single Cell SplitSeq Data #41

Remi-Gau opened this issue Dec 2, 2022 · 0 comments
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dallas_usa Dallas event marseille_france Marseille event project

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@Remi-Gau
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Remi-Gau commented Dec 2, 2022

Added as an issue for book keeping

Source:
https://framagit.org/brainhack_marseille/ref2019/-/issues/7

Led by: Dipankar Bachar (dipankar.bachar@univ-amu.fr)
Project Description

Single cell SplitSeq is a recent and cheap method to produce single cell data. But, as it is a new method, there exists not many tools and pipeline to de-multiplex and analyse the splitseq data. So, the aim of this brain hack project is to better understand the method of SpliSeq , to test the existing tools, to propose/create new algorithm and if possible to develop tools/pipeline in order to demultiplex/analyse Spliseq data.
Skills required to participate

Understanding basic Single Cell transcription method.
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@Remi-Gau