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fasta-format.scroll
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import ../code/conceptPage.scroll
id fasta-format
name FASTA
appeared 2004
tags textDataFormat
fileType text
antlr https://github.com/antlr/grammars-v4/tree/master/fasta
centralPackageRepositoryCount 0
country United States
originCommunity National Center for Biotechnology Information && University of Virginia
wikipedia https://en.wikipedia.org/wiki/FASTA_format
example
>SEQUENCE_1
MTEITAAMVKELRESTGAGMMDCKNALSETNGDFDKAVQLLREKGLGKAAKKADRLAAEG
LVSVKVSDDFTIAAMRPSYLSYEDLDMTFVENEYKALVAELEKENEERRRLKDPNKPEHK
IPQFASRKQLSDAILKEAEEKIKEELKAQGKPEKIWDNIIPGKMNSFIADNSQLDSKLTL
MGQFYVMDDKKTVEQVIAEKEKEFGGKIKIVEFICFEVGEGLEKKTEDFAAEVAAQL
>SEQUENCE_2
SATVSEINSETDFVAKNDQFIALTKDTTAHIQSNSLQSVEELHSSTINGVKFEEYLKSQI
ATIGENLVVRRFATLKAGANGVVNGYIHTNGRVGVVIAAACDSAEVASKSRDLLRQICMH
related ascii fastq-format r python ruby perl
summary In bioinformatics, FASTA format is a text-based format for representing either nucleotide sequences or peptide sequences, in which nucleotides or amino acids are represented using single-letter codes. The format also allows for sequence names and comments to precede the sequences. The format originates from the FASTA software package, but has now become a standard in the field of bioinformatics.The simplicity of FASTA format makes it easy to manipulate and parse sequences using text-processing tools and scripting languages like the R programming language, Python, Ruby, and Perl.
pageId 468001
dailyPageViews 453
created 2004
backlinksCount 98
revisionCount 315
appeared 2011
isbndb 0