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sam-format.scroll
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import ../code/conceptPage.scroll
id sam-format
name SAM file format
appeared 2009
tags textDataFormat
fileType text
centralPackageRepositoryCount 0
country United Kingdom and United States and China
originCommunity Wellcome Trust Sanger Institute and Broad Institute of MIT and Harvard and University of California Los Angeles and Boston College and University of Michigan and Chinese Academy of Science
reference https://dash.harvard.edu/bitstream/handle/1/10246875/2723002.pdf?sequence=1
wikipedia https://en.wikipedia.org/wiki/SAM_(file_format)
related tsv bam-format fastq-format
summary Sequence Alignment Map (SAM) is a text-based format for storing biological sequences aligned to a reference sequence developed by Heng Li and Bob Handsaker et al. It is widely used for storing data, such as nucleotide sequences, generated by next generation sequencing technologies. The format supports short and long reads (up to 128Mbp) produced by different sequencing platforms and is used to hold mapped data within the Genome Analysis Toolkit (GATK) and across the Broad Institute, the Wellcome Sanger Institute, and throughout the 1000 Genomes Project. Sequence Alignment/Map (SAM) format for alignment of nucleotide sequences (e.g. sequencing reads) to (a) reference sequence(s). May contain base-call and alignment qualities and other data.
pageId 49906854
created 2016
backlinksCount 18
revisionCount 31
dailyPageViews 167
appeared 2009
isbndb 0