Supress diagnostic plots in pdf

[VirginiaMorera]

Hello,

Is there a way to suppress the plotting of all diagnostic plots in pdf? It generates a >30.000km pdf that takes ages to create, and there's no option to suppress it apparently. Diag_save refers only to the .txt file.

Thanks!

[brianstock]

Sorry about this - no, short of forking your own copy of MixSIAR and commenting out line 786 of output_JAGS.R. I need to separate the GUI from MixSIAR and push a new version to CRAN this week, and will make this small change.

[brianstock]

Hi Virginia,

You can now set output_options$diag_save_ggmcmc = FALSE as input to output_JAGS(). Install the version I just pushed:

devtools::install_github("brianstock/MixSIAR", dependencies=T)

And then see

?output_JAGS