-
Notifications
You must be signed in to change notification settings - Fork 21
/
IdentifiersOrgDataSource.txt
574 lines (574 loc) · 81.2 KB
/
IdentifiersOrgDataSource.txt
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
2D-PAGE protein 2d-page.protein http://2dbase.techfak.uni-bielefeld.de/cgi-bin/2d/2d.cgi?ac=$id P39172 unknown 1 urn:miriam:2d-page.protein ^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])$
3DMET 3dmet http://www.3dmet.dna.affrc.go.jp/cgi/show_data.php?acc=$id B00162 unknown 1 urn:miriam:3dmet ^B\d{5}$
ABS abs http://genome.crg.es/datasets/abs2005/entries/$id.html A0014 unknown 1 urn:miriam:abs ^A\d+$
Aceview Worm aceview.worm http://www.ncbi.nlm.nih.gov/IEB/Research/Acembly/av.cgi?db=worm&c=Gene&l=$id aap-1 unknown 1 urn:miriam:aceview.worm ^[a-z0-9-]+$
Aclame aclame http://aclame.ulb.ac.be/perl/Aclame/Genomes/mge_view.cgi?view=info&id=$id mge:2 unknown 1 urn:miriam:aclame ^mge:\d+$
AERS AERS http://aers.data2semantics.org/resource/drug/$id ADENINE unknown 1
Affy X http://www.affymetrix.com/ https://www.affymetrix.com/LinkServlet?probeset=$id 1851_s_at probe 0 urn:miriam:affy.probeset \d{4,}((_[asx])?_at)? Affymetrix Probeset
AFTOL aftol.taxonomy http://wasabi.lutzonilab.net/pub/displayTaxonInfo?aftol_id=$id 959 unknown 1 urn:miriam:aftol.taxonomy ^\d+$
AGD agd http://agd.vital-it.ch/Ashbya_gossypii/geneview?gene=$id AGR144C unknown 1 urn:miriam:agd ^AGR\w+$
Agilent Ag http://agilent.com A_24_P98555 probe 0 A_\d+_.+ Agilent
Allergome allergome http://www.allergome.org/script/dettaglio.php?id_molecule=$id 1948 unknown 1 urn:miriam:allergome ^\d+$
AmoebaDB amoebadb http://amoebadb.org/amoeba/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$id EDI_244000 unknown 1 urn:miriam:amoebadb ^EDI_\d+$
Anatomical Therapeutic Chemical atc http://www.whocc.no/atc_ddd_index/?code=$id A10BA02 unknown 1 urn:miriam:atc ^\w(\d+)?(\w{1,2})?(\d+)?$
Anatomical Therapeutic Chemical Vetinary atcvet http://www.whocc.no/atcvet/atcvet_index/?code=$id QJ51RV02 unknown 1 urn:miriam:atcvet ^Q[A-Z0-9]+$
Animal Diversity Web adw http://animaldiversity.ummz.umich.edu/accounts/$id/ Lycalopex_vetulus unknown 1 urn:miriam:adw ^[A-Z_a-z]+$
Animal Genome Cattle QTL cattleqtldb http://www.animalgenome.org/cgi-bin/QTLdb/BT/qdetails?QTL_ID=$id 4685 unknown 1 urn:miriam:cattleqtldb ^\d+$
Animal Genome Chicken QTL chickenqtldb http://www.animalgenome.org/cgi-bin/QTLdb/GG/qdetails?QTL_ID=$id 14362 unknown 1 urn:miriam:chickenqtldb ^\d+$
Animal Genome Pig QTL pigqtldb http://www.animalgenome.org/cgi-bin/QTLdb/SS/qdetails?QTL_ID=$id 14 unknown 1 urn:miriam:pigqtldb ^\d+$
Animal Genome Sheep QTL sheepqtldb http://www.animalgenome.org/cgi-bin/QTLdb/OA/qdetails?QTL_ID=$id 19803 unknown 1 urn:miriam:sheepqtldb ^\d+$
Animal TFDB Family atfdb.family http://www.bioguo.org/AnimalTFDB/family.php?fam=$id CUT unknown 1 urn:miriam:atfdb.family ^\w+$
AntWeb antweb http://www.antweb.org/specimen.do?name=$id casent0106247 unknown 1 urn:miriam:antweb ^casent\d+(\-D\d+)?$
AOP-Wiki KE AopKe https://aopwiki.org/ https://aopwiki.org/events/$id 3 unknown 1 urn:miriam:aop.events ^\d+$ AOP-Wiki Key Events
AOP-Wiki AOP Aop https://aopwiki.org/ https://aopwiki.org/aops/$id 3 pathway 1 urn:miriam:aop ^\d+$ AOP-Wiki Adverse Outcome Pathway
AOP-Wiki KER AopKer https://aopwiki.org/ https://aopwiki.org/relationships/$id 5 interaction 1 urn:miriam:aop.relationships ^\d+$ AOP-Wiki Key Event Relationships
AOP-Wiki Stressor AopS https://aopwiki.org/ https://aopwiki.org/stressors/ 222 metabolite 1 urn:miriam:aop.stressor ^\d+$ AOP-Wiki Stressor
APD apd http://aps.unmc.edu/AP/database/query_output.php?ID=$id 01001 unknown 1 urn:miriam:apd ^\d{5}$
AphidBase Transcript aphidbase.transcript http://isyip.genouest.org/apps/grs-2.2/grs?reportID=aphidbase_transcript_report&objectID=$id ACYPI000159 unknown 1 urn:miriam:aphidbase.transcript ^ACYPI\d{6}(-RA)?$
ArachnoServer arachnoserver http://www.arachnoserver.org/toxincard.html?id=$id AS000060 unknown 1 urn:miriam:arachnoserver ^AS\d{6}$
ArrayExpress arrayexpress http://www.ebi.ac.uk/arrayexpress/experiments/$id E-MEXP-1712 unknown 1 urn:miriam:arrayexpress ^[AEP]-\w{4}-\d+$
ArrayExpress Platform arrayexpress.platform http://www.ebi.ac.uk/arrayexpress/arrays/$id A-GEOD-50 unknown 1 urn:miriam:arrayexpress.platform ^[AEP]-\w{4}-\d+$
arXiv arxiv http://arxiv.org/abs/$id 0807.4956v1 unknown 1 urn:miriam:arxiv ^(\w+(\-\w+)?(\.\w+)?/)?\d{4,7}(\.\d{4}(v\d+)?)?$
ASAP asap http://asap.ahabs.wisc.edu/asap/feature_info.php?LocationID=WIS&FeatureID=$id ABE-0009634 unknown 1 urn:miriam:asap ^[A-Za-z0-9-]+$
AspGD Locus aspgd.locus http://www.aspergillusgenome.org/cgi-bin/locus.pl?dbid=$id ASPL0000349247 unknown 1 urn:miriam:aspgd.locus ^[A-Za-z_0-9]+$
AspGD Protein aspgd.protein http://www.aspergillusgenome.org/cgi-bin/protein/proteinPage.pl?dbid=$id ASPL0000349247 unknown 1 urn:miriam:aspgd.protein ^[A-Za-z_0-9]+$
ATCC atcc http://www.lgcstandards-atcc.org/Products/All/$id.aspx 11303 unknown 1 urn:miriam:atcc ^\d+$
AutDB autdb http://autism.mindspec.org/GeneDetail/$id ADA unknown 1 urn:miriam:autdb ^[A-Z]+[A-Z-0-9]{2,}$
BacMap Biography bacmap.biog http://bacmap.wishartlab.com/organisms/$id 1050 unknown 1 urn:miriam:bacmap.biog ^\d+$
BacMap Map bacmap.map http://bacmap.wishartlab.com/maps/$id/index.html AP011135 unknown 1 urn:miriam:bacmap.map ^\w+(\_)?\d+(\.\d+)?$
BDGP EST bdgp.est http://www.ncbi.nlm.nih.gov/nucest/$id EY223054.1 unknown 1 urn:miriam:bdgp.est ^\w+(\.)?(\d+)?$
BDGP insertion DB bdgp.insertion http://flypush.imgen.bcm.tmc.edu/pscreen/details.php?line=$id KG09531 unknown 1 urn:miriam:bdgp.insertion ^\w+$
BeetleBase beetlebase http://beetlebase.org/cgi-bin/gbrowse/BeetleBase3.gff3/?name=$id TC010103 unknown 1 urn:miriam:beetlebase ^TC\d+$
Bgee family bgee.family http://bgee.unil.ch/bgee/bgee?page=gene_family&action=family_details&gene_family_id=$id ENSFM00500000270089 unknown 1 urn:miriam:bgee.family ^(ENSFM|ENSGTV:)\d+$
Bgee gene bgee.gene http://bgee.unil.ch/bgee/bgee?page=gene&action=summary&gene_id=$id ENSDARG00000013057 unknown 1 urn:miriam:bgee.gene ^(ENS|FBgn)\w+$
Bgee organ bgee.organ http://bgee.unil.ch/bgee/bgee?page=anatomy&action=organ_details&organ_id=$id&organ_children=on EHDAA:2185 unknown 1 urn:miriam:bgee.organ ^(XAO|ZFA|EHDAA|EMAPA|EV|MA)\:\d+$
Bgee stage bgee.stage http://bgee.unil.ch/bgee/bgee?page=anatomy&action=organs&stage_id=$id&stage_children=on HsapDO:0000004 unknown 1 urn:miriam:bgee.stage ^(FBvd|XtroDO|HsapDO|MmusDO)\:\d+$
BIND Bi http://www.bind.ca/ http://www.bind.ca/Action?identifier=bindid&idsearch=$id interaction 1 urn:miriam:bind ^\d+$ BIND
BindingDB bindingDB http://www.bindingdb.org/bind/chemsearch/marvin/MolStructure.jsp?monomerid=$id 22360 unknown 1 urn:miriam:bindingDB ^\d+$
BioCarta Pathway biocarta.pathway http://www.biocarta.com/pathfiles/$id.asp h_aktPathway unknown 1 urn:miriam:biocarta.pathway ^([hm]\_)?\w+Pathway$
BioCatalogue biocatalogue.service https://www.biocatalogue.org/services/$id 614 unknown 1 urn:miriam:biocatalogue.service ^\d+$
BioCyc Bc http://biocyc.org http://biocyc.org/getid?id=$id ECOLI:CYT-D-UBIOX-CPLX gene 1 urn:miriam:biocyc ^[A-Z-0-9]+(?<!CHEBI)(\:)?[A-Za-z0-9+_.%-]+$ BioCyc
BioGrid Bg http://thebiogrid.org/ http://thebiogrid.org/$id 31623 interaction 1 urn:miriam:biogrid ^\d+$ BioGRID
BioModels Database Bm http://www.ebi.ac.uk/biomodels/ http://www.ebi.ac.uk/biomodels-main/$id BIOMD0000000048 pathway 1 urn:miriam:biomodels.db ^((BIOMD|MODEL)\d{10})|(BMID\d{12})$ BioModels Database
BioNumbers bionumbers http://www.bionumbers.hms.harvard.edu/bionumber.aspx?s=y&id=$id&ver=1 104674 unknown 1 urn:miriam:bionumbers ^\d+$
Bioontology MESH MSH http://bioportal.bioontology.org/ http://purl.bioontology.org/ontology/MSH/$id C536282 unknown 1 urn:miriam:mesh
Bioontology UMLS NCIM NCIM http://linkedlifedata.com/resource/umls/id/$id C3203102 unknown 1
BioPortal bioportal http://bioportal.bioontology.org/ontologies/$id 1046 unknown 1 urn:miriam:bioportal ^\d+$
BioProject bioproject http://www.ncbi.nlm.nih.gov/bioproject?term=$id PRJDB3 unknown 1 urn:miriam:bioproject ^PRJ[DEN][A-Z]\d+$
BioSample biosample http://www.ebi.ac.uk/biosamples/browse.html?keywords=$id SAMEG70402 unknown 1 urn:miriam:biosample ^\w{3}[NE](\w)?\d+$
BioSharing biosharing http://www.biosharing.org/$id bsg-000052 unknown 1 urn:miriam:biosharing ^bsg-\d{6}$
BioSystems Bs http://www.ncbi.nlm.nih.gov/biosystems/ http://www.ncbi.nlm.nih.gov/biosystems/$id 001 pathway 1 urn:miriam:biosystems ^\d+$ BioSystems
BitterDB Compound bitterdb.cpd http://bitterdb.agri.huji.ac.il/bitterdb/compound.php?id=$id 46 unknown 1 urn:miriam:bitterdb.cpd ^\d+$
BitterDB Receptor bitterdb.rec http://bitterdb.agri.huji.ac.il/bitterdb/Receptor.php?id=$id 1 unknown 1 urn:miriam:bitterdb.rec ^\d+$
BOLD Taxonomy bold.taxonomy http://www.boldsystems.org/index.php/Taxbrowser_Taxonpage?taxid=$id 27267 unknown 1 urn:miriam:bold.taxonomy ^\d+$
BRENDA Br http://www.brenda-enzymes.org/ http://www.brenda-enzymes.org/php/result_flat.php4?ecno=$id 1.1.1.1 unknown 1 urn:miriam:brenda ^((\d+\.-\.-\.-)|(\d+\.\d+\.-\.-)|(\d+\.\d+\.\d+\.-)|(\d+\.\d+\.\d+\.\d+))$ BRENDA
Brenda Tissue Ontology bto http://purl.bioontology.org/ontology/BTO/$id BTO:0000146 unknown 1 urn:miriam:bto ^BTO:\d{7}$
Broad Fungal Genome Initiative broad http://www.broadinstitute.org/annotation/genome/magnaporthe_grisea/GeneDetails.html?sp=$id S7000002168151102 unknown 1 urn:miriam:broad ^S\d+$
BugBase Expt bugbase.expt http://bugs.sgul.ac.uk/bugsbase/tabs/experiment.php?expt_id=$id&action=view 288 unknown 1 urn:miriam:bugbase.expt ^\d+$
BugBase Protocol bugbase.protocol http://bugs.sgul.ac.uk/bugsbase/tabs/protocol.php?protocol_id=$id&%3Baction=view 67 unknown 1 urn:miriam:bugbase.protocol ^\d+$
BYKdb bykdb http://bykdb.ibcp.fr/data/html/annotated/$id.html A0AYT5 unknown 1 urn:miriam:bykdb ^\w+$
CABRI cabri http://www.fr.cabri.org/CABRI/srs-bin/wgetz?-e+-page+EntryPage+%5B$id%5D dsmz_mutz-id:ACC 291 unknown 1 urn:miriam:cabri ^([A-Za-z]+)?(\_)?([A-Za-z-]+)\:([A-Za-z0-9 ]+)$
Canadian Drug Product Database cdpd http://webprod3.hc-sc.gc.ca/dpd-bdpp/info.do?lang=eng&code=$id 63250 unknown 1 urn:miriam:cdpd ^\d+$
Candida Genome Database cgd http://www.candidagenome.org/cgi-bin/locus.pl?dbid=$id CAL0003079 unknown 1 urn:miriam:cgd ^CAL\d{7}$
CAPS-DB caps http://www.bioinsilico.org/cgi-bin/CAPSDB/getCAPScluster?nidcl=$id 434 unknown 1 urn:miriam:caps ^\d+$
CAS Ca https://commonchemistry.cas.org/ https://commonchemistry.cas.org/detail?cas_rn=$id 50-00-0 metabolite 1 urn:miriam:cas ^\d{1,7}\-\d{2}\-\d$ CAS
CATH domain cath.domain http://www.cathdb.info/domain/$id 1cukA01 unknown 1 urn:miriam:cath.domain ^\w+$
CATH superfamily cath.superfamily http://www.cathdb.info/cathnode/$id 1.10.10.200 unknown 1 urn:miriam:cath.superfamily ^\d+(\.\d+(\.\d+(\.\d+)?)?)?$
CAZy cazy http://www.cazy.org/$id.html GT10 unknown 1 urn:miriam:cazy ^GT\d+$
CCDS Cc http://identifiers.org/ccds/ http://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=ALLFIELDS&DATA=$id CCDS43989 gene 0 urn:miriam:ccds ^CCDS\d+\.\d+$ Consensus CDS
Cell Cycle Ontology cco http://bioportal.bioontology.org/ontologies/1507?p=terms&conceptid=$id CCO:P0000023 unknown 1 urn:miriam:cco ^CCO\:\w+$
Cell Image Library cellimage http://cellimagelibrary.org/images/$id 24801 unknown 1 urn:miriam:cellimage ^\d+$
Cell Signaling Technology Antibody cst.ab http://www.cellsignal.com/products/$id.html 3305 unknown 1 urn:miriam:cst.ab ^\d+$
Cell Signaling Technology Pathways cst http://www.cellsignal.com/reference/pathway/$id.html Akt_PKB unknown 1 urn:miriam:cst ^[A-Za-z0-9_-]+$
Cell Type Ontology cl http://purl.bioontology.org/ontology/CL/$id CL:0000232 unknown 1 urn:miriam:cl ^CL:\d{7}$
CGSC Strain cgsc http://cgsc.biology.yale.edu/Strain.php?ID=$id 11042 unknown 1 urn:miriam:cgsc ^\d+$
CharProt charprot http://www.jcvi.org/charprotdb/index.cgi/view/$id CH_001923 unknown 1 urn:miriam:charprot ^CH_\d+$
ChEBI Ce http://www.ebi.ac.uk/chebi/ http://www.ebi.ac.uk/chebi/searchId.do?chebiId=$id CHEBI:36927 metabolite 1 urn:miriam:chebi ^CHEBI:\d+$ ChEBI
ChemBank chembank http://chembank.broadinstitute.org/chemistry/viewMolecule.htm?cbid=$id 1000000 unknown 1 urn:miriam:chembank ^\d+$
ChEMBL compound Cl https://www.ebi.ac.uk/chembldb/ https://www.ebi.ac.uk/chembl/compound/inspect/$id CHEMBL308052 metabolite 1 urn:miriam:chembl.compound ^CHEMBL\d+$
ChEMBL target chembl.target https://www.ebi.ac.uk/chembl/target/inspect/$id CHEMBL3467 unknown 1 urn:miriam:chembl.target ^CHEMBL\d+$
ChEMBL target component chembl.targetcomponent https://www.ebi.ac.uk/chembldb/ http://rdf.ebi.ac.uk/resource/chembl/targetcomponent/$id CHEMBL_TC_3597 unknown 1
LinkedChemistry ChEMBL molecule linkedchemistry.chembl.molecule http://linkedchemistry.info/chembl/molecule/m$id 1 unknown 1
LinkedChemistry ChEMBL id linkedchemistry.chembl.id http://linkedchemistry.info/chembl/chemblid/$id CHEMBL6329 unknown 1
LinkedChemistry ChEMBL target linkedchemistry.chembl.target http://linkedchemistry.info/chembl/target/t$id 1 unknown 1
ChemDB chemdb http://cdb.ics.uci.edu/cgibin/ChemicalDetailWeb.py?chemical_id=$id 3966782 unknown 1 urn:miriam:chemdb ^\d+$
Chemical Component Dictionary pdb-ccd http://www.ebi.ac.uk/pdbe-srv/pdbechem/chemicalCompound/show/$id AB0 unknown 1 urn:miriam:pdb-ccd ^\w{3}$
ChemIDplus chemidplus http://chem.sis.nlm.nih.gov/chemidplus/chemidheavy.jsp http://chem.sis.nlm.nih.gov/chemidplus/direct.jsp?regno=$id 000057272 metabolite 1 urn:miriam:chemidplus ^\d+$
Chemspider Cs http://www.chemspider.com/ http://www.chemspider.com/Chemical-Structure.$id.html 56586 metabolite 1 urn:miriam:chemspider ^\d+$ ChemSpider
Cint C probe 0
CLDB cldb http://bioinformatics.istge.it/hypercldb/$id.html cl3603 unknown 1 urn:miriam:cldb ^cl\d+$
ClinicalTrials.gov clinicaltrials http://clinicaltrials.gov/ct2/show/$id NCT00222573 unknown 1 urn:miriam:clinicaltrials ^NCT\d{8}$
CluSTr clustr HUMAN:55140:308.6 unknown 1 urn:miriam:clustr ^[0-9A-Za-z]+:\d+:\d{1,5}(\.\d)?$
CMR Gene cmr.gene http://cmr.jcvi.org/cgi-bin/CMR/shared/GenePage.cgi?locus=$id NTL15EF2281 unknown 1 urn:miriam:cmr.gene ^\w+(\_)?\w+$
CodeLink Ge http://www.appliedmicroarrays.com/ GE86325 probe 0 CodeLink
COGs cogs http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?$id COG0001 unknown 1 urn:miriam:cogs ^COG\d+$
COGs Function cogs.function http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?fun=$id A unknown 1 urn:miriam:cogs.function ^[A-Z]$
COMBINE specifications combine.specifications http://co.mbine.org/specifications/$id sbgn.er.level-1.version-1.2 unknown 1 urn:miriam:combine.specifications ^\w+(\-|\.|\w)*$
Compulyeast compulyeast http://compluyeast2dpage.dacya.ucm.es/cgi-bin/2d/2d.cgi?ac=$id O08709 unknown 1 urn:miriam:compulyeast ^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])$
ConceptWiki ConceptWiki http://www.conceptwiki.org/concept/$id 33a28bb2-35ed-4d94-adfd-3c96053cbaaf unknown 1
Conoserver conoserver http://www.conoserver.org/?page=card&table=protein&id=$id 2639 unknown 1 urn:miriam:conoserver ^\d+$
Conserved Domain Database cdd http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=$id cd00400 unknown 1 urn:miriam:cdd ^(cd)?\d{5}$
Coriell Cell Repositories coriell http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=$id GM17027 unknown 1 urn:miriam:coriell ^[A-Z]{2}\d+$
CORUM corum http://mips.helmholtz-muenchen.de/genre/proj/corum/complexdetails.html?id=$id 100 unknown 1 urn:miriam:corum ^\d+$
CryptoDB cryptodb http://cryptodb.org/cryptodb/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$id cgd7_230 unknown 1 urn:miriam:cryptodb ^\w+
CSA csa http://www.ebi.ac.uk/thornton-srv/databases/CSA_NEW/SearchResults.php?PDBID=$id 1a05 unknown 1 urn:miriam:csa ^[0-9][A-Za-z0-9]{3}$
CTD Chemical ctd.chemical http://ctdbase.org/detail.go?type=chem&acc=$id D001151 unknown 1 urn:miriam:ctd.chemical ^D\d+$
CTD Disease ctd.disease http://ctdbase.org/detail.go?type=disease&db=MESH&acc=$id D053716 unknown 1 urn:miriam:ctd.disease ^D\d+$
CTD Gene ctd.gene http://ctdbase.org/ http://ctdbase.org/basicQuery.go?bqCat=gene&bq=$id 101 gene 1 urn:miriam:ctd.gene ^\d+$
Cube db cubedb http://epsf.bmad.bii.a-star.edu.sg/cube/db/data/$id/ AKR unknown 1 urn:miriam:cubedb ^[A-Za-z_0-9]+$
CutDB pmap.cutdb http://cutdb.burnham.org/relation/show/$id 25782 unknown 1 urn:miriam:pmap.cutdb ^\d+$
CYGD cygd http://mips.helmholtz-muenchen.de/genre/proj/yeast/singleGeneReport.html?entry=$id YFL039c unknown 1 urn:miriam:cygd ^\w{2,3}\d{2,4}(\w)?$
DailyMed dailymed http://dailymed.nlm.nih.gov/dailymed/lookup.cfm?setid=$id 8889bcd7-d0e9-434b-b09d-30132bd033b0 unknown 1 urn:miriam:dailymed ^[A-Za-z0-9-]+
DARC darc http://darcsite.genzentrum.lmu.de/darc/view.php?id=$id 1250 unknown 1 urn:miriam:darc ^\d+$
Database of Interacting Proteins Dip http://dip.doe-mbi.ucla.edu/ http://dip.doe-mbi.ucla.edu/dip/DIPview.cgi?ID=$id DIP-743N interaction 1 urn:miriam:dip ^DIP[\:\-]\d{3}[EN]$ Database of Interacting Proteins
Database of Quantitative Cellular Signaling: Model doqcs.model http://doqcs.ncbs.res.in/template.php?y=accessiondetails&an=$id 57 unknown 1 urn:miriam:doqcs.model ^\d+$
Database of Quantitative Cellular Signaling: Pathway doqcs.pathway http://doqcs.ncbs.res.in/template.php?y=pathwaydetails&pn=$id 131 unknown 1 urn:miriam:doqcs.pathway ^\d+$
DATF datf http://datf.cbi.pku.edu.cn/entry-display.php?id=$id AT1G01030.1 unknown 1 urn:miriam:datf ^AT[1-5]G\d{5}(\.\d+)?$
DBD dbd http://www.transcriptionfactor.org/index.cgi?Search%2FDomain+domain%3A$id+cat%3ADBD 0045310 unknown 1 urn:miriam:dbd ^\d+$
dbEST dbest http://www.ncbi.nlm.nih.gov/nucest/$id BP100000 unknown 1 urn:miriam:dbest ^[A-Z]\d+(\.\d+)?$
DBG2 Introns dbg2introns http://webapps2.ucalgary.ca/~groupii/cgi-bin/intron.cgi?name=$id Cu.me.I1 unknown 1 urn:miriam:dbg2introns ^\w{1,2}\.(\w{1,2}\.)?[A-Za-z0-9]+$
dbProbe dbprobe http://www.ncbi.nlm.nih.gov/probe/?term=$id 1000000 unknown 1 urn:miriam:dbprobe ^\d+$
dbSNP Sn http://www.ncbi.nlm.nih.gov/sites/entrez?db=snp http://www.ncbi.nlm.nih.gov/projects/SNP/snp_ref.cgi?rs=$id 121909098 gene 1 urn:miriam:dbsnp ^\d+$ dbSNP
Degradome Database degradome http://degradome.uniovi.es/cgi-bin/protease/$id Ax1 unknown 1 urn:miriam:degradome ^[AMCST][0-9x][0-9]$
DEPOD depod http://www.koehn.embl.de/depod/showp.php?gene=$id PTPN1 unknown 1 urn:miriam:depod ^[A-Z0-9]+$
Dictybase EST dictybase.est http://dictybase.org/db/cgi-bin/feature_page.pl?primary_id=$id DDB0016567 unknown 1 urn:miriam:dictybase.est ^DDB\d+$
Dictybase Gene dictybase.gene http://dictybase.org/gene/$id DDB_G0267522 unknown 1 urn:miriam:dictybase.gene ^DDB_G\d+$
DisProt disprot http://www.disprot.org/protein.php?id=$id DP00001 unknown 1 urn:miriam:disprot ^DP\d{5}$
DOI doi http://dx.doi.org/$id 10.1038/nbt1156 unknown 1 urn:miriam:doi ^(doi\:)?\d{2}\.\d{4}.*$
DOMMINO dommino http://orion.rnet.missouri.edu/~nz953/DOMMINO/index.php/result/show_network/$id 2GC4 unknown 1 urn:miriam:dommino ^[0-9][A-Za-z0-9]{3}$
DOOR door http://csbl1.bmb.uga.edu/OperonDB/genedetail.php?id=$id 60101 unknown 1 urn:miriam:door ^\d+$
DPV dpv http://www.dpvweb.net/dpv/showdpv.php?dpvno=$id 100 unknown 1 urn:miriam:dpv ^\d+$
DragonDB Allele dragondb.allele http://antirrhinum.net/cgi-bin/ace/generic/tree/DragonDB?name=$id&%3Bclass=Allele cho unknown 1 urn:miriam:dragondb.allele ^\w+$
DragonDB DNA dragondb.dna http://antirrhinum.net/cgi-bin/ace/generic/tree/DragonDB?name=$id%3Bclass%3DDNA 3hB06 unknown 1 urn:miriam:dragondb.dna ^\d\w+$
DragonDB Locus dragondb.locus http://antirrhinum.net/cgi-bin/ace/generic/tree/DragonDB?name=$id&%3Bclass=Locus DEF unknown 1 urn:miriam:dragondb.locus ^\w+$
DragonDB Protein dragondb.protein http://antirrhinum.net/cgi-bin/ace/generic/tree/DragonDB?name=$id%3Bclass%3DPeptide AMDEFA unknown 1 urn:miriam:dragondb.protein ^\w+$
DRSC drsc http://www.flyrnai.org/cgi-bin/RNAi_gene_lookup_public.pl?gname=$id DRSC05221 unknown 1 urn:miriam:drsc ^DRSC\d+$
DrugBank Dr http://www.drugbank.ca/ http://www.drugbank.ca/drugs/$id DB00001 metabolite 1 urn:miriam:drugbank ^D(B|BSALT)(\d{1})?\d{5}$ DrugBank
Drugbank Enzymes drugbankEnzymes http://www.drugbank.ca/ http://www4.wiwiss.fu-berlin.de/drugbank/resource/enzymes/$id 1 unknown 1
Drugbank Target drugbankTarget http://www.drugbank.ca/ http://www.drugbank.ca/molecules/$id 6511 unknown 1 urn:miriam:drugbank.target ^\d+$
EchoBASE echobase http://www.york.ac.uk/res/thomas/Gene.cfm?recordID=$id EB0170 unknown 1 urn:miriam:echobase ^EB\d+$
EcoCyc Eco http://ecocyc.org/ http://ecocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=$id 325-BISPHOSPHATE-NUCLEOTIDASE-RXN interaction Escherichia coli 1 EcoCyc
EcoGene Ec http://ecogene.org/ http://ecogene.org/geneInfo.php?eg_id=$id EG10173 gene Escherichia coli 1 urn:miriam:ecogene ^EG\d+$ EcoGene
EcoliWiki ecoliwiki http://ecoliwiki.net/colipedia/index.php/$id:Gene aaeA unknown 1 urn:miriam:ecoliwiki ^[A-Za-z0-9-]+$
EDAM Ontology edam http://purl.bioontology.org/ontology/EDAM/$id 1664 unknown 1 urn:miriam:edam ^(data|topic|operation|format)\_\d{4}$
eggNOG eggnog http://eggnog.embl.de/version_3.0/cgi/search.py?search_term_0=$id veNOG12876 unknown 1 urn:miriam:eggnog ^\w+$
ELM elm http://elm.eu.org/elms/elmPages/$id.html CLV_MEL_PAP_1 unknown 1 urn:miriam:elm ^[A-Za-z_0-9]+$
EMBL Em http://www.ebi.ac.uk/embl/ http://www.ebi.ac.uk/ena/data/view/$id X58356 gene 1 urn:miriam:ena.embl ^[A-Z]+[0-9]+$ European Nucleotide Archive
Ensembl En http://www.ensembl.org/ http://ensemblgenomes.org/id/$id ENSG00000139618 gene 1 urn:miriam:ensembl ^((ENS[A-Z]*[FPTG]\d{11}(\.\d+)?)|(FB\w{2}\d{7})|(Y[A-Z]{2}\d{3}[a-zA-Z](\-[A-Z])?)|([A-Z_a-z0-9]+(\.)?(t)?(\d+)?([a-z])?))$ Ensembl
Ensembl B. subtilis EnBs http://www.ensembl.org http://bacteria.ensembl.org/Bacillus/B_subtilis/Gene/Summary?g=$id EBBACG00000000013 gene Bacillus subtilis 1 EBBACG\d{11} Ensembl
Ensembl Bacteria ensembl.bacteria http://bacteria.ensembl.org/id/$id MU9_3181 unknown 1 urn:miriam:ensembl.bacteria ^((EB\w+)|([A-Z0-9]+\_[A-Z0-9]+))$
Ensembl C. elegans EnCe http://www.ensembl.org http://www.ensembl.org/Caenorhabditis_elegans/Gene/Summary?g=$id Y42H9B.1 gene Caenorhabditis elegans 1 Ensembl
Ensembl Chicken EnGg http://www.ensembl.org http://www.ensembl.org/Gallus_gallus/Gene/Summary?g=$id ENSGALG00000021736 gene Gallus gallus 1 ENSGALG\d{11} Ensembl
Ensembl Chimp EnPt http://www.ensembl.org http://www.ensembl.org/Pan_troglodytes/Gene/Summary?g=$id ENSPTRG00000036034 gene Pan troglodytes 1 ENSPTRG\d{11} Ensembl
Ensembl Cow EnBt http://www.ensembl.org http://www.ensembl.org/Bos_taurus/Gene/Summary?g=$id ENSBTAG00000043548 gene Bos taurus 1 ENSBTAG\d{11} Ensembl
Ensembl Dog EnCf http://www.ensembl.org http://www.ensembl.org/Canis_familiaris/Gene/Summary?g=$id ENSCAFG00000025860 gene Canis familiaris 1 ENSCAFG\d{11} Ensembl
Ensembl E. coli EnEc http://www.ensembl.org http://bacteria.ensembl.org/Escherichia_Shigella/E_coli_K12/Gene/Summary?g=$id EBESCG00000000010 gene Escherichia coli 1 EBESCG\d{11} Ensembl
Ensembl Fruitfly EnDm http://www.ensembl.org http://www.ensembl.org/Drosophila_melanogaster/Gene/Summary?g=$id FBgn0032956 gene Drosophila melanogaster 1 FBgn\d{7} Ensembl
Ensembl Fungi ensembl.fungi http://fungi.ensembl.org/id/$id CADAFLAT00006211 unknown 1 urn:miriam:ensembl.fungi ^[A-Z-a-z0-9]+$
Ensembl Horse EnQc http://www.ensembl.org http://www.ensembl.org/Equus_caballus/Gene/Summary?g=$id ENSECAG00000026160 gene Equus caballus 1 ENSECAG\d{11} Ensembl
Ensembl Human EnHs http://www.ensembl.org http://www.ensembl.org/Homo_sapiens/Gene/Summary?g=$id ENSG00000139618 gene Homo sapiens 1 ENSG\d{11} Ensembl
Ensembl M. tuberculosis EnMx http://www.ensembl.org http://bacteria.ensembl.org/Mycobacterium/M_tuberculosis_H37Rv/Gene/Summary?g=$id EBMYCG00000003122 gene Mycobacterium tuberculosis 1 EBMYCG\d{11} Ensembl
Ensembl Metazoa ensembl.metazoa http://metazoa.ensembl.org/id/$id FBtr0084214 unknown 1 urn:miriam:ensembl.metazoa ^\w+(\.)?\d+$
Ensembl Mosquito EnAg http://www.ensembl.org http://www.ensembl.org/Anopheles_gambiae/Gene/Summary?_q=$id AGAP006864 gene Anopheles gambiae 1 AGAP\d{6} Ensembl
Ensembl Mouse EnMm http://www.ensembl.org http://www.ensembl.org/Mus_musculus/Gene/Summary?g=$id ENSMUSG00000017167 gene Mus musculus 1 ENSMUSG\d{11} Ensembl
Ensembl Pig EnSs http://www.ensembl.org http://www.ensembl.org/Sus_scrofa/Gene/Summary?g=$id ENSSSCG00000004244 gene Sus scrofa 1 ENSSSCG\d{11} Ensembl
Ensembl Plants EP http://plants.ensembl.org/ http://plants.ensembl.org/id/$id AT1G73965 gene 1 urn:miriam:ensembl.plant ^\w+(\.\d+)?(\.\d+)?$ Ensembl Plants
Ensembl Protists ensembl.protist http://protists.ensembl.org/id/$id PFC0120w unknown 1 urn:miriam:ensembl.protist ^\w+$
Ensembl Rat EnRn http://www.ensembl.org http://www.ensembl.org/Rattus_norvegicus/Gene/Summary?g=$id ENSRNOG00000016648 gene Rattus norvegicus 1 ENSRNOG\d{11} Ensembl
Ensembl Xenopus EnXt http://www.ensembl.org http://www.ensembl.org/Xenopus_tropicalis/Gene/Summary?g=$id ENSXETG00000029448 gene Xenopus tropicalis 1 ENSXETG\d{11} Ensembl
Ensembl Yeast EnSc http://www.ensembl.org http://www.ensembl.org/Saccharomyces_cerevisiae/Gene/Summary?g=$id YGR147C gene Saccharomyces cerevisiae 1 Y[A-Z][RL]\d{3}[WC](?:\-[A-Z])? Ensembl
Ensembl Zebrafish EnDr http://www.ensembl.org http://www.ensembl.org/Danio_rerio/Gene/Summary?g=$id ENSDARG00000024771 gene Danio rerio 1 ENSDARG\d{11} Ensembl
Entrez Gene L http://www.ncbi.nlm.nih.gov/gene http://www.ncbi.nlm.nih.gov/gene/$id 100010 gene 1 urn:miriam:ncbigene ^\d+$ Entrez Gene
Enzyme Nomenclature E http://www.ebi.ac.uk/intenz/ http://www.ebi.ac.uk/intenz/query?cmd=SearchEC&ec=$id 1.1.1.1 gene 1 urn:miriam:ec-code ^\d+\.-\.-\.-|\d+\.\d+\.-\.-|\d+\.\d+\.\d+\.-|\d+\.\d+\.\d+\.(n)?\d+$ Enzyme Nomenclature
EPD epd http://epd.vital-it.ch/cgi-bin/query_result.pl?out_format=NICE&Entry_0=$id TA_H3 unknown 1 urn:miriam:epd ^[A-Z-_0-9]+$
Evidence Code Ontology eco http://www.ebi.ac.uk/ontology-lookup/?termId=$id ECO:0000006 unknown 1 urn:miriam:eco ECO:\d{7}$
Experimental Factor Ontology efo http://www.ebi.ac.uk/ontology-lookup/?termId=EFO%3A$id 0004859 unknown 1 urn:miriam:efo ^\d{7}$
F-SNP fsnp http://compbio.cs.queensu.ca/cgi-bin/compbio/search/main.cgi?search_mode=id&%3Bid_type=snp_id&%3Bid_val=$id rs17852708 unknown 1 urn:miriam:fsnp ^rs\d+$
FlyBase F http://flybase.org/ http://flybase.org/reports/$id.html FBgn0011293 gene Drosophila melanogaster 1 urn:miriam:flybase ^FB\w{2}\d{7}$ FlyBase
Flystock flystock http://flystocks.bio.indiana.edu/Reports/$id.html 33159 unknown 1 urn:miriam:flystock ^\d+$
FMA fma http://www.ebi.ac.uk/ontology-lookup/?termId=$id FMA:67112 unknown 1 urn:miriam:fma ^FMA:\d+$
FunCat funcat http://mips.helmholtz-muenchen.de/cgi-bin/proj/funcatDB/search_advanced.pl?action=2&wert=$id 32.01.01 unknown 1 urn:miriam:funcat ^\d{2}|\d{2}\.\d{2}|\d{2}\.\d{2}\.\d{2}|\d{2}\.\d{2}\.\d{2}\d{2}$
FuncBase Fly funcbase.fly http://func.mshri.on.ca/fly/genes/list_functional_scores/$id 10194 unknown 1 urn:miriam:funcbase.fly ^\d+$
FuncBase Human funcbase.human http://func.mshri.on.ca/human/genes/list_functional_scores/$id 119514 unknown 1 urn:miriam:funcbase.human ^\d+$
FuncBase Mouse funcbase.mouse http://func.mshri.on.ca/mouse/genes/list_functional_scores/$id 1351341 unknown 1 urn:miriam:funcbase.mouse ^\d+$
FuncBase Yeast funcbase.yeast http://func.mshri.on.ca/yeast/genes/list_functional_scores/$id 2701 unknown 1 urn:miriam:funcbase.yeast ^\d+$
Fungal Barcode fbol http://www.fungalbarcoding.org/BioloMICS.aspx?Table=Fungal+barcodes&Rec=$id&Fields=All&ExactMatch=T 2224 unknown 1 urn:miriam:fbol ^\d+$
FungiDB fungidb http://fungidb.org/gene/$id CNBG_0001 unknown 1 urn:miriam:fungidb ^[A-Za-z_0-9]+$
GABI gabi http://gabi.rzpd.de/database/cgi-bin/GreenCards.pl.cgi?BioObjectId=$id&Mode=ShowBioObject 2679240 unknown 1 urn:miriam:gabi ^\w+$
Genatlas genatlas http://genatlas.medecine.univ-paris5.fr/fiche.php?symbol=$id HBB unknown 1 urn:miriam:genatlas ^\w+$
GenBank G http://www.ncbi.nlm.nih.gov/genbank/ http://www.ncbi.nlm.nih.gov/nuccore/$id NW_004190323 gene 0 urn:miriam:insdc ^([A-Z]\d{5}|[A-Z]{2}\d{6}|[A-Z]{4}\d{8}|[A-J][A-Z]{2}\d{5})(\.\d+)?$ GenBank
Gene Ontology Reference go.ref http://www.geneontology.org/cgi-bin/references.cgi#$id GO_REF:0000041 unknown 1 urn:miriam:go.ref ^GO_REF:\d{7}$
Gene Wiki Gw http://en.wikipedia.org/wiki/Portal:Gene_Wiki http://plugins.biogps.org/cgi-bin/wp.cgi?id=$id 1017 gene 0 urn:miriam:genewiki ^\d+$ Gene Wiki
GeneCards genecards http://bioinformatics.mdanderson.org/genecards/cgi-bin/carddisp.pl?gene=$id ABL1 unknown 1 urn:miriam:genecards ^\w+$
GeneDB genedb http://www.genedb.org/gene/$id Cj1536c unknown 1 urn:miriam:genedb ^[\w\d\.-]*$
GeneFarm genefarm http://urgi.versailles.inra.fr/Genefarm/Gene/display_gene.htpl?GENE_ID=$id 4892 unknown 1 urn:miriam:genefarm ^\d+$
GeneOntology T http://www.ebi.ac.uk/QuickGO/ http://www.ebi.ac.uk/QuickGO/GTerm?id=$id GO:0006915 ontology 1 urn:miriam:go ^GO:\d{7}$ Gene Ontology
GeneTree genetree http://www.ensembl.org/Multi/GeneTree/Image?db=core%3Bgt%3D$id ENSGT00550000074763 unknown 1 urn:miriam:genetree ^ENSGT\d+$
Genome Properties genprop http://cmr.jcvi.org/tigr-scripts/CMR/shared/GenomePropDefinition.cgi?prop_acc=$id GenProp0151 unknown 1 urn:miriam:genprop ^GenProp\d+$
GenPept genpept http://www.ncbi.nlm.nih.gov/protein/$id?report=genpept CAA71118.1 unknown 1 urn:miriam:genpept ^\w{3}\d{5}(\.\d+)?$
GEO geo http://www.ncbi.nlm.nih.gov/sites/GDSbrowser?acc=$id GDS1234 unknown 1 urn:miriam:geo ^GDS\d+$
GiardiaDB giardiadb http://giardiadb.org/giardiadb/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$id GL50803_102438 unknown 1 urn:miriam:giardiadb ^\w+$
GLIDA GPCR glida.gpcr http://pharminfo.pharm.kyoto-u.ac.jp/services/glida/gpcr_information.php?id=$id ACM1_HUMAN unknown 1 urn:miriam:glida.gpcr ^[A-Z-_0-9]+$
GLIDA Ligand glida.ligand http://pharminfo.pharm.kyoto-u.ac.jp/services/glida/ligand_information.php?id=$id L000001 unknown 1 urn:miriam:glida.ligand ^L\d+$
GlycoEpitope glycoepitope http://www.glyco.is.ritsumei.ac.jp/epitope-bin/epitope.cgi?mode=general&epitope_id=$id EP0311 unknown 1 urn:miriam:glycoepitope ^EP\d{4}$
GlycomeDB glycomedb http://www.glycome-db.org/database/showStructure.action?glycomeId=$id 1 unknown 1 urn:miriam:glycomedb ^\d+$
GOA goa http://www.ebi.ac.uk/GOA/ http://www.ebi.ac.uk/QuickGO/GProtein?ac=$id P12345 unknown 1 urn:miriam:goa ^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])$
GOLD genome gold.genome http://www.genomesonline.org/cgi-bin/GOLD/GOLDCards.cgi?goldstamp=$id Gi07796 unknown 1 urn:miriam:gold.genome ^[Gi|Gc]\d+$
GOLD metadata gold.meta http://genomesonline.org/cgi-bin/GOLD/bin/GOLDCards.cgi?goldstamp=$id Gm00047 unknown 1 urn:miriam:gold.meta ^Gm\d+$
Golm Metabolome Database gmd http://gmd.mpimp-golm.mpg.de/Metabolites/$id.aspx 68513255-fc44-4041-bc4b-4fd2fae7541d unknown 1 urn:miriam:gmd ^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$
Golm Metabolome Database Analyte gmd.analyte http://gmd.mpimp-golm.mpg.de/Analytes/$id 4f0fa9b6-514f-4ff4-98cc-0009bc08eb80 unknown 1 urn:miriam:gmd.analyte ^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$
Golm Metabolome Database GC-MS spectra gmd.gcms http://gmd.mpimp-golm.mpg.de/Spectrums/$id 53d583d8-40c6-40e1-9296-23f821cd77a5 unknown 1 urn:miriam:gmd.gcms ^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$
Golm Metabolome Database Profile gmd.profile http://gmd.mpimp-golm.mpg.de/profile/default.aspx?XemlId=$id 10b38aaf-b977-4950-85b8-f4775f66658d unknown 1 urn:miriam:gmd.profile ^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$
Golm Metabolome Database Reference Substance gmd.ref http://gmd.mpimp-golm.mpg.de/ReferenceSubstances/$id 8cf84adb-b4db-4807-ac98-0004247c35df unknown 1 urn:miriam:gmd.ref ^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$
GPCRDB gpcrdb http://www.gpcr.org/7tm/proteins/$id RL3R1_HUMAN unknown 1 urn:miriam:gpcrdb ^\w+$
Gramene Arabidopsis EnAt http://www.gramene.org/ http://www.gramene.org/Arabidopsis_thaliana/Gene/Summary?g=$id ATMG01360-TAIR-G gene Arabidopsis thaliana 1 AT[\dCM]G\d{5}\-TAIR\-G Grameen Arabidopsis
Gramene Genes DB Gg http://www.gramene.org/ http://www.gramene.org/db/genes/search_gene?acc=$id GR:0060184 gene 1 urn:miriam:gramene.gene ^GR\:\d+$ Gramene Genes
Gramene Growth Stage Ontology gramene.growthstage http://www.gramene.org/db/ontology/search?id=$id GRO:0007133 unknown 1 urn:miriam:gramene.growthstage ^GRO\:\d+$
Gramene Literature Gl http://www.gramene.org/ http://www.gramene.org/db/literature/pub_search?ref_id=$id 6200 gene 0 Gramene Literature
Gramene Maize EnZm http://www.ensembl.org http://www.maizesequence.org/Zea_mays/Gene/Summary?g=$id GRMZM2G174107 gene 1 Gramene Maize
Gramene Pathway Gp http://www.gramene.org/pathway AAH72400 pathway 0 Gramene Pathway
Gramene protein gramene.protein http://www.gramene.org/db/protein/protein_search?protein_id=$id 78073 unknown 1 urn:miriam:gramene.protein ^\d+$
Gramene QTL gramene.qtl http://www.gramene.org/db/qtl/qtl_display?qtl_accession_id=$id CQG5 unknown 1 urn:miriam:gramene.qtl ^\w+$
Gramene Rice EnOj http://www.gramene.org/ http://www.gramene.org/Oryza_sativa/Gene/Summary?db=core;g=$id osa-MIR171a gene 1 Gramene Rice
Gramene Taxonomy gramene.taxonomy http://www.gramene.org/db/ontology/search?id=$id GR_tax:013681 unknown 1 urn:miriam:gramene.taxonomy ^GR\_tax\:\d+$
GreenGenes greengenes http://greengenes.lbl.gov/cgi-bin/show_one_record_v2.pl?prokMSA_id=$id 100000 unknown 1 urn:miriam:greengenes ^\d+$
GRIN Plant Taxonomy grin.taxonomy http://www.ars-grin.gov/cgi-bin/npgs/html/taxon.pl?$id 19333 unknown 1 urn:miriam:grin.taxonomy ^\d+$
GRSDB grsdb http://bioinformatics.ramapo.edu/GRSDB2/geneview.php?geneID=$id 10142 unknown 1 urn:miriam:grsdb ^\d+$
GXA Expt gxa.expt http://www.ebi.ac.uk/gxa/experiment/$id E-MTAB-62 unknown 1 urn:miriam:gxa.expt ^[AEP]-\w{4}-\d+$
GXA Gene gxa.gene http://www.ebi.ac.uk/gxa/gene/$id AT4G01080 unknown 1 urn:miriam:gxa.gene ^\w+$
Guide to Pharmacology Gpl http://www.guidetopharmacology.org/ http://www.guidetopharmacology.org/GRAC/LigandDisplayForward?ligandId=$id 1627 metabolite 1 urn:miriam:iuphar.ligand ^\d+$ Guide to Pharmacology
H-InvDb Locus hinv.locus http://h-invitational.jp/hinv/spsoup/locus_view?hix_id=$id HIX0004394 unknown 1 urn:miriam:hinv.locus ^HIX\d{7}(\.\d+)?$
H-InvDb Protein hinv.protein http://h-invitational.jp/hinv/protein/protein_view.cgi?hip_id=$id HIP000030660 unknown 1 urn:miriam:hinv.protein ^HIP\d{9}(\.\d+)?$
H-InvDb Transcript hinv.transcript http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=$id HIT000195363 unknown 1 urn:miriam:hinv.transcript ^HIT\d{9}(\.\d+)?$
HAMAP hamap http://hamap.expasy.org/unirule/$id MF_01400 unknown 1 urn:miriam:hamap ^MF_\d+$
HCVDB hcvdb http://euhcvdb.ibcp.fr/euHCVdb/do/displayHCVEntry?primaryAC=$id M58335 unknown 1 urn:miriam:hcvdb ^M\d{5}$
HGMD hgmd http://www.hgmd.cf.ac.uk/ac/gene.php?gene=$id CALM1 unknown 1 urn:miriam:hgmd ^[A-Z_0-9]+$
HGNC H http://www.genenames.org https://www.genenames.org/data/gene-symbol-report/#!/symbol/$id DAPK1 gene Homo sapiens 1 urn:miriam:hgnc.symbol ^[A-Za-z-0-9_]+(\@)?$ HGNC Symbol
HGNC Accession number Hac http://www.genenames.org https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/$id HGNC:2674 gene Homo sapiens 1 urn:miriam:hgnc ^(HGNC:)?\d{1,5}$ HGNC
HMDB Ch http://www.hmdb.ca/ http://www.hmdb.ca/metabolites/$id HMDB00001 metabolite 1 urn:miriam:hmdb ^HMDB\d{5}$ HMDB
HOGENOM hogenom http://pbil.univ-lyon1.fr/cgi-bin/view-tree.pl?db=HOGENOM5&query=$id HBG284870 unknown 1 urn:miriam:hogenom ^\w+$
HOMD Sequence Metainformation homd.seq http://www.homd.org/modules.php?op=modload&name=GenomeList&file=index&link=detailinfo&seqid=$id SEQF1003 unknown 1 urn:miriam:homd.seq ^SEQF\d+$
HOMD Taxonomy homd.taxon http://www.homd.org/modules.php?op=modload&name=HOMD&file=index&oraltaxonid=$id&view=dynamic 811 unknown 1 urn:miriam:homd.taxon ^\d+$
Homeodomain Research hdr http://research.nhgri.nih.gov/apps/homeodomain/web/index.cgi?mode=view&%3Bview=proteins&%3Bid=$id 63 unknown 1 urn:miriam:hdr ^\d+$
HomoloGene Hg http://www.ncbi.nlm.nih.gov/homologene/ http://www.ncbi.nlm.nih.gov/homologene/$id 1000 gene 1 urn:miriam:homologene ^\d+$ HomoloGene
HOVERGEN hovergen http://pbil.univ-lyon1.fr/cgi-bin/view-tree.pl?query=$id&db=HOVERGEN HBG004341 unknown 1 urn:miriam:hovergen ^HBG\d+$
HPA hpa http://www.proteinatlas.org/$id ENSG00000026508 unknown 1 urn:miriam:hpa ^ENSG\d{11}$
HPRD Hp http://www.hprd.org/ http://www.hprd.org/protein/$id 00001 interaction Homo sapiens 1 urn:miriam:hprd ^\d+$ HPRD
HsGene Hs gene Homo sapiens 1
HSSP hssp ftp://ftp.cmbi.ru.nl/pub/molbio/data/hssp/$id.hssp.bz2 102l unknown 1 urn:miriam:hssp ^\w{4}$
HUGE huge http://www.kazusa.or.jp/huge/gfpage/$id/ KIAA0001 unknown 1 urn:miriam:huge ^KIAA\d{4}$
Human Disease Ontology doid http://www.ebi.ac.uk/ontology-lookup/?termId=$id DOID:11337 unknown 1 urn:miriam:doid ^DOID\:\d+$
ICD icd http://apps.who.int/classifications/icd10/browse/2010/en#/$id C34 unknown 1 urn:miriam:icd ^[A-Z]\d+(\.[-\d+])?$
ICEberg element iceberg.element http://db-mml.sjtu.edu.cn/ICEberg/feature_page.php?ice_id=$id 100 unknown 1 urn:miriam:iceberg.element ^\d+$
ICEberg family iceberg.family http://db-mml.sjtu.edu.cn/ICEberg/browse_result.php?type=fam&fam_id=$id 1 unknown 1 urn:miriam:iceberg.family ^\d+$
IDEAL ideal http://idp1.force.cs.is.nagoya-u.ac.jp/IDEAL/idealItem.php?id=$id IID00001 unknown 1 urn:miriam:ideal ^IID\d+$
Illumina Il http://www.illumina.com/ ILMN_5668 probe 0 ILMN_\d+ Illumina
IMEx imex http://www.ebi.ac.uk/intact/imex/main.xhtml?query=$id IM-12080-80 unknown 1 urn:miriam:imex ^IM-\d+(-?)(\d+?)$
IMGT HLA imgt.hla http://www.ebi.ac.uk/cgi-bin/imgt/hla/get_allele.cgi?$id A*01:01:01:01 unknown 1 urn:miriam:imgt.hla ^[A-Z0-9*:]+$
IMGT LIGM imgt.ligm http://genius.embnet.dkfz-heidelberg.de/menu/cgi-bin/srs7.1.3.1/wgetz?-id+4ktAl1fNMTA+-e+%5BIMGT%3A%27$id%27%5D M94112 unknown 1 urn:miriam:imgt.ligm ^M\d+$
InChI inchi http://www.chemspider.com/$id InChI=1S/C2H6O/c1-2-3/h3H,2H2,1H3 unknown 1 urn:miriam:inchi ^InChI\=1S\/[A-Za-z0-9]+(\/[cnpqbtmsih][A-Za-z0-9\-\+\(\)\,]+)+$
InChIKey inchikey http://cactus.nci.nih.gov/chemical/structure/$id/names RYYVLZVUVIJVGH-UHFFFAOYSA-N unknown 1 urn:miriam:inchikey ^[A-Z]{14}\-[A-Z]{10}(\-[A-N])?
IntAct Ia http://www.ebi.ac.uk/intact/ http://www.ebi.ac.uk/intact/pages/details/details.xhtml?interactionAc=$id EBI-2307691 interaction 1 urn:miriam:intact ^EBI\-[0-9]+$ IntAct
IntAct Molecule intact.molecule http://www.ebi.ac.uk/intact/molecule/$id EBI-366083 unknown 1 urn:miriam:intact.molecule ^EBI\-[0-9]+$
Integrated Microbial Genomes Gene img.gene http://img.jgi.doe.gov/cgi-bin/w/main.cgi?section=GeneDetail&gene_oid=$id 638309541 unknown 1 urn:miriam:img.gene ^\d+$
Integrated Microbial Genomes Taxon img.taxon http://img.jgi.doe.gov/cgi-bin/w/main.cgi?section=TaxonDetail&taxon_oid=$id 648028003 unknown 1 urn:miriam:img.taxon ^\d+$
InterPro I http://www.ebi.ac.uk/interpro/ http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=$id IPR000100 protein 1 urn:miriam:interpro ^IPR\d{6}$ InterPro
IPI Ip http://www.ebi.ac.uk/IPI http://www.ebi.ac.uk/cgi-bin/dbfetch?db=IPI&id=$id&format=default IPI00000001 protein 1 urn:miriam:ipi ^IPI\d{8}$ IPI
IRD Segment Sequence ird.segment http://www.fludb.org/brc/fluSegmentDetails.do?ncbiGenomicAccession=$id CY077097 unknown 1 urn:miriam:ird.segment ^\w+(\_)?\d+(\.\d+)?$
iRefWeb irefweb http://wodaklab.org/iRefWeb/interaction/show/$id 617102 unknown 1 urn:miriam:irefweb ^\d+$
IRGSP Gene Ir http://rgp.dna.affrc.go.jp/IRGSP/ Os12g0561000 gene 1 Os\d{2}g\d+ IRGSP Gene
ISBN isbn http://www.worldcat.org/isbn/$id 9781584885658 unknown 1 urn:miriam:isbn ^(ISBN)?(-13|-10)?[:]?[ ]?(\d{2,3}[ -]?)?\d{1,5}[ -]?\d{1,7}[ -]?\d{1,6}[ -]?(\d|X)$
ISFinder isfinder http://www-is.biotoul.fr/index.html?is_special_name=$id ISA1083-2 unknown 1 urn:miriam:isfinder ^IS\w+(\-\d)?$
ISSN issn http://catalog.loc.gov/cgi-bin/Pwebrecon.cgi?Search_Arg=0745-4570$id&PID=le0kCQllk84KcxI3gMhUTowLMnn9H 0745-4570 unknown 1 urn:miriam:issn ^\d{4}\-\d{4}$
IUPHAR family iuphar.family http://www.iuphar-db.org/DATABASE/FamilyMenuForward?familyId=$id 78 unknown 1 urn:miriam:iuphar.family ^\d+$
IUPHAR ligand iuphar.ligand http://www.iuphar-db.org/DATABASE/LigandDisplayForward?ligandId=$id 1755 unknown 1 urn:miriam:iuphar.ligand ^\d+$
IUPHAR receptor iuphar.receptor http://www.iuphar-db.org/DATABASE/ObjectDisplayForward?objectId=$id 101 unknown 1 urn:miriam:iuphar.receptor ^\d+$
Japan Chemical Substance Dictionary jcsd http://nikkajiweb.jst.go.jp/nikkaji_web/pages/top_e.jsp?CONTENT=syosai&SN=$id J55.713G unknown 1 urn:miriam:jcsd ^J\d{1,3}(\.\d{3})?(\.\d{1,3})?[A-Za-z]$
Japan Collection of Microorganisms jcm http://www.jcm.riken.go.jp/cgi-bin/jcm/jcm_number?JCM=$id 17254 unknown 1 urn:miriam:jcm ^\d+$
JAX Mice jaxmice http://jaxmice.jax.org/strain/$id.html 005012 unknown 1 urn:miriam:jaxmice ^\d+$
JCGGDB jcggdb http://jcggdb.jp/idb/jcggdb/$id JCGG-STR008690 unknown 1 urn:miriam:jcggdb ^JCGG-STR\d{6}$
JSTOR jstor http://www.jstor.org/stable/$id 3075966 unknown 1 urn:miriam:jstor ^\d+$
JWS Online jws http://jjj.mib.ac.uk/webMathematica/DataBaseSelection/processModelSelection.jsp?keytype=authors&keyword=$id curien unknown 1 urn:miriam:jws ^\w+$
KEGG Compound Ck http://www.genome.jp/kegg/ligand.html http://www.genome.jp/dbget-bin/www_bget?cpd:$id C12345 metabolite 1 urn:miriam:kegg.compound ^C\d+$ KEGG Compound
KEGG Disease kegg.disease http://www.kegg.jp/entry/$id H00076 unknown 1 urn:miriam:kegg.disease ^H\d+$
KEGG Drug Kd http://www.genome.jp/kegg/drug/ http://www.genome.jp/dbget-bin/www_bget?dr:$id D00123 metabolite 1 urn:miriam:kegg.drug ^D\d+$ KEGG Drug
KEGG Environ kegg.environ http://www.kegg.jp/entry/$id ev:E00032 unknown 1 urn:miriam:kegg.environ ^ev\:E\d+$
KEGG Genes Kg http://www.genome.jp/kegg/genes.html http://www.genome.jp/dbget-bin/www_bget?$id syn:ssr3451 gene 1 urn:miriam:kegg.genes ^\w+:[\w\d\.-]*$ KEGG Genes
KEGG Genome kegg.genome http://www.kegg.jp/entry/$id eco unknown 1 urn:miriam:kegg.genome ^(T0\d+|\w{3,5})$
KEGG Glycan Kl http://www.genome.jp/kegg/glycan/ http://www.genome.jp/dbget-bin/www_bget?gl:$id G00123 metabolite 1 urn:miriam:kegg.glycan ^G\d+$ KEGG Glycan
KEGG Metagenome kegg.metagenome http://www.genome.jp/kegg/catalog/org_list3.html http://www.kegg.jp/entry/$id T30002 unknown 1 urn:miriam:kegg.metagenome ^T3\d+$
KEGG Module kegg.module http://www.kegg.jp/entry/$id M00002 unknown 1 urn:miriam:kegg.module ^([a-z]{3,5}_)?M\d{5}$
KEGG Orthology kegg.orthology http://www.genome.jp/kegg/ko.html http://www.genome.jp/dbget-bin/www_bget?ko+$id K00001 protein 1 urn:miriam:kegg.orthology ^K\d+$
KEGG Pathway Kp http://www.genome.jp/kegg/pathway.html http://www.genome.jp/dbget-bin/www_bget?pathway+$id hsa00620 pathway 1 urn:miriam:kegg.pathway ^\w{2,4}\d{5}$ KEGG Pathway
KEGG Reaction Rk http://www.genome.jp/kegg/reaction/ http://www.genome.jp/dbget-bin/www_bget?rn:$id R00100 pathway 1 urn:miriam:kegg.reaction ^R\d+$ KEGG Reaction
KiSAO biomodels.kisao http://purl.bioontology.org/ontology/KISAO/kisao:$id KISAO_0000057 unknown 1 urn:miriam:biomodels.kisao ^KISAO_\d+$
KnapSack knapsack http://kanaya.naist.jp/knapsack_jsp/information.jsp?word=$id C00000001 unknown 1 urn:miriam:knapsack ^C\d{8}
Ligand Expo ligandexpo http://ligand-depot.rutgers.edu/pyapps/ldHandler.py?formid=cc-index-search&target=$id&operation=ccid ABC unknown 1 urn:miriam:ligandexpo ^(\w){3}$
Ligand-Gated Ion Channel database lgic http://www.ebi.ac.uk/compneur-srv/LGICdb/HTML/$id.php 5HT3Arano unknown 1 urn:miriam:lgic ^\w+$
LigandBox ligandbox http://ligandbox.protein.osaka-u.ac.jp/ligandbox/cgi-bin/liginf.cgi?id=$id D00001 unknown 1 urn:miriam:ligandbox ^D\d{5}
LIPID MAPS Lm http://www.lipidmaps.org https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessClassSearch&LMID=$id LMPR0102010012 metabolite 1 urn:miriam:lipidmaps ^LM(FA|GL|GP|SP|ST|PR|SL|PK)[0-9]{4}([0-9a-zA-Z]{4,6})?$ LIPID MAPS
LipidBank Lb http://lipidbank.jp/index.html http://lipidbank.jp/cgi-bin/detail.cgi?id=$id BBA0001 metabolite 1 urn:miriam:lipidbank ^\w+\d+$ LipidBank
Locus Reference Genomic lrg http://www.lrg-sequence.org/ ftp://ftp.ebi.ac.uk/pub/databases/lrgex/$id.xml LRG_258 unknown 1 urn:miriam:lrg ^LRG_\d+$
MACiE Ma http://www.ebi.ac.uk/thornton-srv/databases/MACiE/index.html http://www.ebi.ac.uk/thornton-srv/databases/cgi-bin/MACiE/entry/getPage.pl?id=$id M0001 protein 1 urn:miriam:macie ^M\d{4}$ MACiE
MaizeGDB Mg https://maizegdb.org/gene_center/gene/$id acc1 gene Zea mays 1 MaizeGDB
MaizeGDB Locus maizegdb.locus http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=$id 25011 unknown 1 urn:miriam:maizegdb.locus ^\d+$
MassBank massbank http://msbi.ipb-halle.de/MassBank/jsp/Dispatcher.jsp?type=disp&id=$id PB000166 unknown 1 urn:miriam:massbank ^[A-Z]{2}[A-Z0-9][0-9]{5}$
MatrixDB Md http://matrixdb.ibcp.fr/ http://matrixdb.ibcp.fr/cgi-bin/model/report/default?name=$id&class=Association P00747_P07355 interaction 1 urn:miriam:matrixdb.association ^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])_.*|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9]_.*)|(GAG_.*)|(MULT_.*)|(PFRAG_.*)|(LIP_.*)|(CAT_.*)$ MatrixDB
MedlinePlus medlineplus http://www.nlm.nih.gov/medlineplus/ency/article/$id.htm 002804 unknown 1 urn:miriam:medlineplus ^\d+$
Melanoma Molecular Map Project Biomaps mmmp:biomaps http://www.mmmp.org/MMMP/public/biomap/viewBiomap.mmmp?id=$id 37 unknown 1 urn:miriam:mmmp:biomaps ^\d+$
MEROPS merops http://merops.sanger.ac.uk/cgi-bin/pepsum?mid=$id S01.001 unknown 1 urn:miriam:merops ^[SCTAGMNU]\d{2}\.\d{3}$
MEROPS Family merops.family http://merops.sanger.ac.uk/cgi-bin/famsum?family=$id S1 unknown 1 urn:miriam:merops.family ^[SCTAGMNU]\d+$
MEROPS Inhibitor merops.inhibitor http://merops.sanger.ac.uk/cgi-bin/pepsum?id=$id I31.952 unknown 1 urn:miriam:merops.inhibitor ^I\d{2}\.\d{3}$
MeSH 2012 mesh.2012 http://www.nlm.nih.gov/cgi/mesh/2012/MB_cgi?mode=&index=$id&view=expanded D018377 unknown 1 urn:miriam:mesh.2012 ^[A-Za-z0-9]+$
MeSH 2013 mesh.2013 http://www.nlm.nih.gov/cgi/mesh/2013/MB_cgi?mode=&index=$id&view=expanded 17165 unknown 1 urn:miriam:mesh.2013 ^[A-Za-z0-9]+$
MetaboLights metabolights http://www.ebi.ac.uk/metabolights/$id MTBLS1 unknown 1 urn:miriam:metabolights ^MTBLS\d+$
MetaCyc Mc http://www.metacyc.org/ http://www.metacyc.org/META/NEW-IMAGE?type=NIL&object=$id D-GLUTAMATE-OXIDASE-RXN interaction 1 MetaCyc
METLIN metlin http://metlin.scripps.edu/metabo_info.php?molid=$id 1455 unknown 1 urn:miriam:metlin ^\d{4}$
MGED Ontology mo http://mged.sourceforge.net/ontologies/MGEDontology.php#$id ArrayGroup unknown 1 urn:miriam:mo ^\w+$
MGI M http://www.informatics.jax.org/ http://www.informatics.jax.org/marker/$id MGI:2442292 gene Mus musculus 1 urn:miriam:mgd ^MGI:\d+$ Mouse Genome Database
Microbial Protein Interaction Database mpid http://www.jcvi.org/mpidb/experiment.php?interaction_id=$id 172 unknown 1 urn:miriam:mpid ^\d+$
MicrosporidiaDB microsporidia http://microsporidiadb.org/micro/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$id ECU03_0820i unknown 1 urn:miriam:microsporidia ^\w+$
MimoDB mimodb http://immunet.cn/mimodb/browse.php?table=mimoset&ID=$id 1 unknown 1 urn:miriam:mimodb ^\d+$
MINT Mi http://mint.bio.uniroma2.it/mint/ http://mint.bio.uniroma2.it/mint/search/inFrameInteraction.do?interactionAc=$id MINT-10000 interaction 1 urn:miriam:mint ^MINT\-\d{1,5}$ MINT
MIPModDB mipmod http://bioinfo.iitk.ac.in/MIPModDB/result.php?code=$id HOSAPI0399 unknown 1 urn:miriam:mipmod ^\w+$
miRBase mature sequence Mbm http://www.mirbase.org/ http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=$id MIMAT0000001 gene 1 urn:miriam:mirbase.mature MIMAT\d{7} miRBase mature sequence
miRBase Sequence Mb http://microrna.sanger.ac.uk/ http://www.mirbase.org/cgi-bin/mirna_entry.pl?acc=$id MI0000001 gene 1 urn:miriam:mirbase MI\d{7} miRBase Sequence
mirEX mirex http://comgen.pl/mirex/?page=results%2Frecord&name=$id&web_temp=1683440&exref=pp2a&limit=yes 165a unknown 1 urn:miriam:mirex ^\d+(\w+)?$
MIRIAM Registry collection miriam.collection http://www.ebi.ac.uk/miriam/main/$id MIR:00000008 unknown 1 urn:miriam:miriam.collection ^MIR:000\d{5}$
MIRIAM Registry resource miriam.resource http://www.ebi.ac.uk/miriam/main/resources/$id MIR:00100005 unknown 1 urn:miriam:miriam.resource ^MIR:001\d{5}$
miRNEST mirnest http://lemur.amu.edu.pl/share/php/mirnest/search.php?search_term=$id MNEST029358 unknown 1 urn:miriam:mirnest ^MNEST\d+$
MMRRC mmrrc http://www.mmrrc.org/catalog/getSDS.php?mmrrc_id=$id 70 unknown 1 urn:miriam:mmrrc ^\d+$
ModelDB modeldb http://senselab.med.yale.edu/ModelDB/ShowModel.asp?model=$id 45539 unknown 1 urn:miriam:modeldb ^\d+$
Molbase molbase http://www.molbase.com/en/index.php?app=search&search_keyword=$id 128796-39-4 unknown 1 urn:miriam:molbase ^(\d{1,7}\-\d{2}\-\d)|([A-Za-z0-9\+\-\_]+)$
Molecular Interactions Ontology psimi http://purl.bioontology.org/ontology/PPIO/$id MI:0308 unknown 1 urn:miriam:psimi ^MI:\d{4}$
Molecular Modeling Database mmdb http://www.ncbi.nlm.nih.gov/Structure/mmdb/mmdbsrv.cgi?uid=$id 50885 unknown 1 urn:miriam:mmdb ^\d{1,5}$
Mouse Adult Gross Anatomy ma http://www.informatics.jax.org/searches/AMA.cgi?id=$id MA:0002502 unknown 1 urn:miriam:ma ^MA:\d+$
MycoBank mycobank http://www.mycobank.org/Biolomics.aspx?Table=Mycobank&MycoBankNr_=$id 349124 unknown 1 urn:miriam:mycobank ^\d+$
MycoBrowser leprae myco.lepra http://mycobrowser.epfl.ch/leprosysearch.php?gene+name=$id ML0224 unknown 1 urn:miriam:myco.lepra ^ML\w+$
MycoBrowser marinum myco.marinum http://mycobrowser.epfl.ch/marinosearch.php?gene+name=$id MMAR_2462 unknown 1 urn:miriam:myco.marinum ^MMAR\_\d+$
MycoBrowser smegmatis myco.smeg http://mycobrowser.epfl.ch/smegmasearch.php?gene+name=$id MSMEG_3769 unknown 1 urn:miriam:myco.smeg ^MSMEG\w+$
NAPP napp http://napp.u-psud.fr/Niveau2.php?specie=$id 351 unknown 1 urn:miriam:napp ^\d+$
NARCIS narcis http://www.narcis.nl/publication/RecordID/$id oai:cwi.nl:4725 unknown 1 urn:miriam:narcis ^oai\:cwi\.nl\:\d+$
NASC code nasc http://arabidopsis.info/StockInfo?NASC_id=$id N1899 unknown 1 urn:miriam:nasc ^(\w+)?\d+$
NASC Gene N http://arabidopsis.info/ ATMG00960-TAIR-G gene Arabidopsis thaliana 1 AT[\dCM]G\d{5}\-TAIR\-G NASC Gene
National Bibliography Number nbn http://nbn-resolving.org/resolver?identifier=$id&verb=full urn:nbn:fi:tkk-004781 unknown 1 urn:miriam:nbn ^urn\:nbn\:[A-Za-z_0-9]+\:([A-Za-z_0-9]+\:)?[A-Za-z_0-9]+$
National Drug Code ndc http://www.hipaaspace.com/Medical_Billing/Coding/National.Drug.Codes/$id 0002-1975-61 unknown 1 urn:miriam:ndc ^\d+\-\d+\-\d+
NCBI Protein Np http://www.ncbi.nlm.nih.gov/protein http://www.ncbi.nlm.nih.gov/protein/$id CAA71118.1 protein 1 urn:miriam:ncbiprotein ^(\w+\d+(\.\d+)?)|(NP_\d+)$ NCBI Protein
NCBI Taxonomy Database Tn unknown 1
NCI Pathway Interaction Database Pid http://pid.nci.nih.gov/ http://pid.nci.nih.gov/search/pathway_landing.shtml?what=graphic&jpg=on&pathway_id=$id pi3kcipathway pathway 1 urn:miriam:pid.pathway ^\w+$ NCI Pathway Interaction Database
NCIm ncim http://ncim.nci.nih.gov/ncimbrowser/ConceptReport.jsp?dictionary=NCI+MetaThesaurus&code=$id C0026339 unknown 1 urn:miriam:ncim ^C\d+$
NCIt ncit http://ncit.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI+Thesaurus&code=$id C80519 unknown 1 urn:miriam:ncit ^C\d+$
NeuroLex neurolex http://www.neurolex.org/wiki/$id Birnlex_721 unknown 1 urn:miriam:neurolex ^([Bb]irnlex_|Sao|nlx_|GO_|CogPO|HDO)\d+$
NeuroMorpho neuromorpho http://neuromorpho.org/neuroMorpho/neuron_info.jsp?neuron_name=$id Rosa2 unknown 1 urn:miriam:neuromorpho ^\w+$
NeuronDB neurondb http://senselab.med.yale.edu/NeuronDB/NeuronProp.aspx?id=$id 265 unknown 1 urn:miriam:neurondb ^\d+$
NEXTDB nextdb http://nematode.lab.nig.ac.jp/db2/ShowCloneInfo.php?clone=$id 6b1 unknown 1 urn:miriam:nextdb ^[A-Za-z0-9]+$
nextProt nextprot http://www.nextprot.org/db/entry/$id NX_O00165 unknown 1 urn:miriam:nextprot ^NX_\w+
NIAEST niaest http://lgsun.grc.nia.nih.gov/cgi-bin/pro3?sname1=$id J0705A10 unknown 1 urn:miriam:niaest ^\w\d{4}\w\d{2}(\-[35])?$
NITE Biological Research Center Catalogue nbrc http://www.nbrc.nite.go.jp/NBRC2/NBRCCatalogueDetailServlet?ID=NBRC&CAT=$id 00001234 unknown 1 urn:miriam:nbrc ^\d+$
NONCODE v3 noncodev3 http://www.noncode.org/NONCODERv3/ncrna.php?ncid=$id 377550 unknown 1 urn:miriam:noncodev3 ^\d+$
NONCODE v4 Gene noncodev4.gene http://www.noncode.org/show_gene.php?id=$id NONHSAG00001 unknown 1 urn:miriam:noncodev4.gene ^NONHSAG\d{5}$
NONCODE v4 Transcript noncodev4.rna http://www.noncode.org/show_rna.php?id=$id NONHSAT000001 unknown 1 urn:miriam:noncodev4.rna ^NONHSAT\d{6}$
NORINE norine http://bioinfo.lifl.fr/norine/result.jsp?ID=$id NOR00681 unknown 1 urn:miriam:norine ^NOR\d+$
NucleaRDB nuclearbd http://www.receptors.org/nucleardb/proteins/$id prgr_human unknown 1 urn:miriam:nuclearbd ^\w+\_\w+$
NuGO wiki Nw http://wiki.nugo.org http://wiki.nugo.org/index.php/$id HMDB00001 metabolite 0 NuGO wiki
Odor Molecules DataBase odor http://senselab.med.yale.edu/OdorDB/eavData.aspx?o=$id 74 unknown 1 urn:miriam:odor ^\d+$
Olfactory Receptor Database ordb http://senselab.med.yale.edu/OrDB/eavData.aspx?o=$id 8497 unknown 1 urn:miriam:ordb ^\d+$
OMA Group oma.grp http://omabrowser.org/cgi-bin/gateway.pl?f=DisplayGroup&p1=$id LCSCCPN unknown 1 urn:miriam:oma.grp ^[A-Z]+$
OMA Protein oma.protein http://omabrowser.org/cgi-bin/gateway.pl?f=DisplayEntry&p1=$id HUMAN16963 unknown 1 urn:miriam:oma.protein ^[A-Z0-9]{5}\d+$
OMIA omia http://omia.angis.org.au/$id/ 1000 unknown 1 urn:miriam:omia ^\d+$
OMIM Om http://omim.org/ http://omim.org/entry/$id 603903 gene 1 urn:miriam:mim ^[*#+%^]?\d{6}$ OMIM
Ontology for Biomedical Investigations obi http://purl.bioontology.org/ontology/OBI/obo:$id OBI_0000225 unknown 1 urn:miriam:obi ^OBI_\d{7}$
Ontology of Physics for Biology opb http://purl.bioontology.org/ontology/OPB/$id OPB_00573 unknown 1 urn:miriam:opb ^OPB_\d+$
OPM opm http://opm.phar.umich.edu/protein.php?pdbid=$id 1h68 unknown 1 urn:miriam:opm ^[0-9][A-Za-z0-9]{3}$
OPS Chemical Registry Service OPS-CRS http://www.rsc.org/ http://chemistry.openphacts.org/OPS$id 21009 unknown 1
OPS Internal URIS for GVK OPS-GVK http://gvk.pharma.openphacts.com/targets/$id t58221 unknown 1
OPS Internal URIS for TGR OPS-TGR http://tgr.pharma.openphacts.com/target/$id t2000005 unknown 1
ORCID orcid https://orcid.org/$id 0000-0002-6309-7327 unknown 1 urn:miriam:orcid ^\d{4}-\d{4}-\d{4}-\d{3}(\d|X)$
OriDB Saccharomyces oridb.sacch http://cerevisiae.oridb.org/details.php?id=$id 1 unknown 1 urn:miriam:oridb.sacch ^\d+$
OriDB Schizosaccharomyces oridb.schizo http://pombe.oridb.org/details.php?id=$id 1 unknown 1 urn:miriam:oridb.schizo ^\d+$
Orphanet orphanet http://www.orpha.net/consor/cgi-bin/OC_Exp.php?Lng=EN&Expert=$id 85163 unknown 1 urn:miriam:orphanet ^\d+$
OrthoDB orthodb http://cegg.unige.ch/orthodb/results?searchtext=$id Q9P0K8 unknown 1 urn:miriam:orthodb ^\w+$
Oryza Tag Line otl http://oryzatagline.cirad.fr/cgi-bin/general_mutant.pl?line=$id AADB12 unknown 1 urn:miriam:otl ^A[A-Z]+\d+$
Oryzabase Ob http://www.shigen.nig.ac.jp/rice/oryzabase http://www.shigen.nig.ac.jp/rice/oryzabase/gateway/gatewayAction.do?target=symbol&id=$id 468 gene Oryza sativa 1 Oryzabase
Oryzabase Gene oryzabase.gene http://www.shigen.nig.ac.jp/rice/oryzabaseV4/gene/detail/$id 117 unknown 1 urn:miriam:oryzabase.gene ^\d+$
Oryzabase Mutant oryzabase.mutant http://www.shigen.nig.ac.jp/rice/oryzabaseV4/strain/inducedMutationLine/detail/$id 21393 unknown 1 urn:miriam:oryzabase.mutant ^\d+$
Oryzabase Stage oryzabase.stage http://www.shigen.nig.ac.jp/rice/oryzabaseV4/devstageineachorgan/detail/$id 34 unknown 1 urn:miriam:oryzabase.stage ^\d+$
Oryzabase Strain oryzabase.strain http://www.shigen.nig.ac.jp/rice/oryzabaseV4/strain/wildCore/detail/$id 1 unknown 1 urn:miriam:oryzabase.strain ^\d+$
Other O gene 1 Other
P3DB Protein p3db.protein http://www.p3db.org/protein.php?id=$id&%3Bref=0 70 unknown 1 urn:miriam:p3db.protein ^\d+$
P3DB Site p3db.site http://www.p3db.org/phosphosite.php?id=$id&ref=0 65 unknown 1 urn:miriam:p3db.site ^\d+$
PaleoDB paleodb http://paleodb.geology.wisc.edu/cgi-bin/bridge.pl?a=basicTaxonInfo&taxon_no=$id 83088 unknown 1 urn:miriam:paleodb ^\d+$
PANTHER Family panther.family http://www.pantherdb.org/panther/family.do?clsAccession=$id PTHR12345 unknown 1 urn:miriam:panther.family ^PTHR\d{5}(\:SF\d{1,3})?$
PANTHER Node panther.node http://www.pantree.org/node/annotationNode.jsp?id=$id PTN000000026 unknown 1 urn:miriam:panther.node ^PTN\d{9}$
PANTHER Pathway panther.pathway http://www.pantherdb.org/pathway/pathwayDiagram.jsp?catAccession=$id P00024 unknown 1 urn:miriam:panther.pathway ^P\d{5}$
PANTHER Pathway Component panther.pthcmp http://www.pantherdb.org/pathway/pathCatDetail.do?clsAccession=$id P00266 unknown 1 urn:miriam:panther.pthcmp ^G|P|U|C|S\d{5}$
PASS2 pass2 http://caps.ncbs.res.in/pass2/superfamily/superfamilydetail.php?superfamilyId=$id 46977 unknown 1 urn:miriam:pass2 ^\d+$
Pathway Commons Pc http://www.pathwaycommons.org/pc/ http://www.pathwaycommons.org/pc/record2.do?id=$id 485991 pathway 1 urn:miriam:pathwaycommons ^\d+$ Pathway Commons
Pathway Ontology PW http://rgd.mcw.edu/rgdweb/ontology/search.html http://purl.bioontology.org/ontology/PW/$id PW:0000208 pathway 1 urn:miriam:pw ^PW:\d{7}$
PATO pato http://www.ebi.ac.uk/ontology-lookup/?termId=$id PATO:0001998 unknown 1 urn:miriam:pato ^PATO:\d{7}$
PaxDb Organism paxdb.organism http://pax-db.org/#!species/$id 9606 unknown 1 urn:miriam:paxdb.organism ^\d+$
PaxDb Protein paxdb.protein http://pax-db.org/#!protein/$id 977869 unknown 1 urn:miriam:paxdb.protein ^\d+$
Pazar Transcription Factor pazar http://www.pazar.info/cgi-bin/tf_search.cgi?geneID=$id TF0001053 unknown 1 urn:miriam:pazar ^TF\w+$
PDB Pd http://www.pdb.org/ http://www.rcsb.org/pdb/explore/explore.do?structureId=$id 2gc4 protein 1 urn:miriam:pdb ^[0-9][A-Za-z0-9]{3}$ Protein Data Bank
PeptideAtlas peptideatlas https://db.systemsbiology.net/sbeams/cgi/PeptideAtlas/Summarize_Peptide?query=QUERY&searchForThis=$id PAp00000009 unknown 1 urn:miriam:peptideatlas ^PAp[0-9]{8}$
Peroxibase peroxibase http://peroxibase.toulouse.inra.fr/browse/process/view_perox.php?id=$id 5282 unknown 1 urn:miriam:peroxibase ^\d+$
Pfam Pf https://pfam.xfam.org/ https://pfam.xfam.org/family/$id/ PF01234 protein 1 urn:miriam:pfam ^PF\d{5}$ Pfam
PharmGKB Disease pharmgkb.disease http://www.pharmgkb.org/disease/$id PA447218 unknown 1 urn:miriam:pharmgkb.disease ^PA\d+$
PharmGKB Drug Pgd http://www.pharmgkb.org/ http://www.pharmgkb.org/drug/$id PA448710 metabolite 1 urn:miriam:pharmgkb.drug ^PA\d+$ PharmGKB Drug
PharmGKB Gene Pgg http://www.pharmgkb.org/ http://www.pharmgkb.org/gene/$id PA131 gene 1 urn:miriam:pharmgkb.gene ^PA\w+$ PharmGKB Gene
PharmGKB Pathways Pgp http://www.pharmgkb.org/ http://www.pharmgkb.org/pathway/$id PA146123006 pathway 1 urn:miriam:pharmgkb.pathways ^PA\d+$ PharmGKB Pathways
Phenol-Explorer phenolexplorer http://www.phenol-explorer.eu/contents/food/$id 75 unknown 1 urn:miriam:phenolexplorer ^\d+$
PhosphoPoint Kinase phosphopoint.kinase http://kinase.bioinformatics.tw/showall.jsp?type=Kinase&info=Gene&name=$id&drawing=0&sorting=0&kinome=1 AURKA unknown 1 urn:miriam:phosphopoint.kinase ^\w+$
PhosphoPoint Phosphoprotein phosphopoint.protein http://kinase.bioinformatics.tw/showall.jsp?type=PhosphoProtein&info=Gene&name=$id&drawing=0&sorting=0&kinome=0 AURKA unknown 1 urn:miriam:phosphopoint.protein ^\w+$
PhosphoSite Protein Pp http://www.phosphosite.org/homeAction.do http://www.phosphosite.org/proteinAction.do?id=$id 12300 protein 1 urn:miriam:phosphosite.protein ^\d{5}$ PhosphoSite Protein
PhosphoSite Residue phosphosite.residue http://www.phosphosite.org/siteAction.do?id=$id 2842 unknown 1 urn:miriam:phosphosite.residue ^\d+$
PhylomeDB phylomedb http://phylomedb.org/?seqid=$id Phy000CLXM_RAT unknown 1 urn:miriam:phylomedb ^\w+$
Phytozome Locus phytozome.locus http://www.phytozome.net/genePage.php?crown&method=0&search=1&detail=1&searchText=locusname%3A$id Glyma0021s00410 unknown 1 urn:miriam:phytozome.locus ^[A-Za-z0-9]+$
PINA Pi http://cbg.garvan.unsw.edu.au/pina/ http://cbg.garvan.unsw.edu.au/pina/interactome.oneP.do?ac=$id&showExtend=null Q13485 interaction 1 urn:miriam:pina ^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])$ PINA
PiroplasmaDB piroplasma http://piroplasmadb.org/piro/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$id TA14985 unknown 1 urn:miriam:piroplasma ^TA\d+$
PIRSF pirsf http://pir.georgetown.edu/cgi-bin/ipcSF?id=$id PIRSF000100 unknown 1 urn:miriam:pirsf ^PIRSF\d{6}$
Plant Genome Network pgn http://pgn.cornell.edu/unigene/unigene_assembly_contigs.pl?unigene_id=$id 196828 unknown 1 urn:miriam:pgn ^\d+$
Plant Ontology po http://purl.bioontology.org/ontology/PO/$id PO:0009089 unknown 1 urn:miriam:po ^PO\:\d+$
PlantGDB Pl http://www.plantgdb.org/ PUT-157a-Vitis_vinifera-37378 gene 1 PUT-[\w\d-]+ PlantGDB
PlasmoDB plasmodb http://plasmodb.org/plasmo/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$id PF11_0344 unknown 1 urn:miriam:plasmodb ^\w+$
PMP pmp http://www.proteinmodelportal.org/query/uniprot/$id Q0VCA6 unknown 1 urn:miriam:pmp ^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])$
Pocketome pocketome http://www.pocketome.org/files/$id.html 1433C_TOBAC_1_252 unknown 1 urn:miriam:pocketome ^[A-Za-z_0-9]+
PolBase polbase http://polbase.neb.com/polymerases/$id#sequences 19-T4 unknown 1 urn:miriam:polbase ^[A-Za-z-0-9]+$
PomBase pombase http://www.pombase.org/spombe/result/$id SPCC13B11.01 unknown 1 urn:miriam:pombase ^S\w+(\.)?\w+(\.)?$
PRIDE pride http://www.ebi.ac.uk/pride/experimentLink.do?experimentAccessionNumber=$id 1 unknown 1 urn:miriam:pride ^\d+$
ProDom prodom http://prodom.prabi.fr/prodom/current/cgi-bin/request.pl?question=DBEN&query=$id PD10000 unknown 1 urn:miriam:prodom ^PD\d+$
ProGlycProt proglyc http://www.proglycprot.org/detail.aspx?ProId=$id AC119 unknown 1 urn:miriam:proglyc ^[A-Z]C\d{1,3}$
PROSITE prosite http://prosite.expasy.org/$id PS00001 unknown 1 urn:miriam:prosite ^PS\d{5}$
ProtClustDB protclustdb http://www.ncbi.nlm.nih.gov/sites/entrez?Db=proteinclusters&Cmd=DetailsSearch&Term=$id O80725 unknown 1 urn:miriam:protclustdb ^\w+$
Protein Data Bank Ligand pdb.ligand http://www.rcsb.org/pdb/ligand/ligandsummary.do?hetId=$id TRQ unknown 1 urn:miriam:pdb.ligand ^[A-Za-z0-9]+$
Protein Model Database pmdb http://mi.caspur.it/PMDB/user/search.php?idsearch=$id PM0012345 unknown 1 urn:miriam:pmdb ^PM\d{7}
Protein Modification Ontology psimod http://www.ebi.ac.uk/ontology-lookup/?termId=$id MOD:00001 unknown 1 urn:miriam:psimod ^MOD:\d{5}
Protein Ontology pr http://pir.georgetown.edu/cgi-bin/pro/entry_pro?id=$id PR:000000024 unknown 1 urn:miriam:pr ^PR\:\d+$
ProtoNet Cluster protonet.cluster http://www.protonet.cs.huji.ac.il/requested/cluster_card.php?cluster=$id 4349895 unknown 1 urn:miriam:protonet.cluster ^\d+$
ProtoNet ProteinCard protonet.proteincard http://www.protonet.cs.huji.ac.il/requested/protein_card.php?protein_id=$id 16941567 unknown 1 urn:miriam:protonet.proteincard ^\d+$
PSCDB pscdb http://idp1.force.cs.is.nagoya-u.ac.jp/pscdb/$id.html 051 unknown 1 urn:miriam:pscdb ^\d+$
Pseudomonas Genome Database pseudomonas http://www.pseudomonas.com/getAnnotation.do?locusID=$id PSEEN0001 unknown 1 urn:miriam:pseudomonas ^P\w+$
PubChem Cp http://pubchem.ncbi.nlm.nih.gov/ 100101 metabolite 1
PubChem-bioassay Cpb http://www.ncbi.nlm.nih.gov/sites/entrez?db=pcassay http://pubchem.ncbi.nlm.nih.gov/assay/assay.cgi?aid=$id 1018 metabolite 1 urn:miriam:pubchem.bioassay ^\d+$ PubChem-bioassay
PubChem-compound Cpc http://pubchem.ncbi.nlm.nih.gov/ http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=$id 100101 metabolite 1 urn:miriam:pubchem.compound ^\d+$ PubChem-compound
PubChem-substance Cps http://pubchem.ncbi.nlm.nih.gov/ http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?sid=$id 100101 metabolite 1 urn:miriam:pubchem.substance ^\d+$ PubChem-substance
PubMed pubmed http://www.ncbi.nlm.nih.gov/PubMed/ http://www.ncbi.nlm.nih.gov/pubmed/$id 16333295 publication 1 urn:miriam:pubmed ^\d+$
PubMed Central pmc http://europepmc.org/articles/$id PMC3084216 unknown 1 urn:miriam:pmc PMC\d+
Rat Genome Database qTL rgd.qtl http://rgd.mcw.edu/rgdweb/report/qtl/main.html?id=$id 1354581 unknown 1 urn:miriam:rgd.qtl ^\d+$
Rat Genome Database strain rgd.strain http://rgd.mcw.edu/rgdweb/report/strain/main.html?id=$id 5688061 unknown 1 urn:miriam:rgd.strain ^\d+$
Reactome Re http://www.reactome.org/ http://www.reactome.org/cgi-bin/eventbrowser_st_id?FROM_REACTOME=1&ST_ID=$id REACT_1590 pathway 1 urn:miriam:reactome ^REACT_\d+(\.\d+)?$ Reactome
REBASE rebase http://rebase.neb.com/rebase/enz/$id.html 101 unknown 1 urn:miriam:rebase ^\d+$
RefSeq Q http://www.ncbi.nlm.nih.gov/projects/RefSeq/ http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=$id NP_012345 gene 1 urn:miriam:refseq ^((AC|AP|NC|NG|NM|NP|NR|NT|NW|XM|XP|XR|YP|ZP)_\d+|(NZ\_[A-Z]{4}\d+))(\.\d+)?$ RefSeq
Relation Ontology ro http://www.obofoundry.org/ro/#$id OBO_REL:is_a unknown 1 urn:miriam:ro ^OBO_REL:\w+$
RESID Res http://www.ebi.ac.uk/RESID/ http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-id+6JSUg1NA6u4+-e+[RESID:'$id'] AA0001 protein 1 urn:miriam:resid ^AA\d{4}$ RESID
Rfam Rf http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?$id RF00066 gene 1 urn:miriam:rfam ^RF\d+$ RFAM
RGD R http://rgd.mcw.edu/ http://rgd.mcw.edu/tools/genes/genes_view.cgi?id=$id 2018 gene Rattus norvegicus 1 urn:miriam:rgd ^\d{4,7}$ Rat Genome Database
Rhea Rh http://www.ebi.ac.uk/rhea/ http://www.ebi.ac.uk/rhea/reaction.xhtml?id=$id 12345 interaction 1 urn:miriam:rhea ^\d{5}$ Rhea
Rice Ensembl Gene Os http://www.gramene.org/Oryza_sativa http://www.gramene.org/Oryza_sativa/geneview?gene=$id LOC_Os04g54800 gene Oryza sativa 1 Rice Ensembl Gene
Rice Genome Annotation Project ricegap http://rice.plantbiology.msu.edu/cgi-bin/ORF_infopage.cgi?orf=$id LOC_Os02g13300 unknown 1 urn:miriam:ricegap ^LOC\_Os\d{1,2}g\d{5}$
RNA Modification Database rnamods http://mods.rna.albany.edu/mods/modifications/view/$id 101 unknown 1 urn:miriam:rnamods ^\d{3}$
Rouge rouge http://www.kazusa.or.jp/rouge/gfpage/$id/ mKIAA4200 unknown 1 urn:miriam:rouge ^m\w+$
SABIO-RK EC Record sabiork.ec http://sabiork.h-its.org/newSearch?q=ecnumber%3A$id 2.7.1.1 unknown 1 urn:miriam:sabiork.ec ^((\d+)|(\d+\.\d+)|(\d+\.\d+\.\d+)|(\d+\.\d+\.\d+\.\d+))$
SABIO-RK Kinetic Record sabiork.kineticrecord http://sabiork.h-its.org/newSearch?q=entryid%3A$id 5046 unknown 1 urn:miriam:sabiork.kineticrecord ^\d+$
SABIO-RK Reaction sabiork.reaction http://sabiork.h-its.org/newSearch?q=sabioreactionid%3A$id 75 unknown 1 urn:miriam:sabiork.reaction ^\d+$
Saccharomyces genome database pathways sgd.pathways http://pathway.yeastgenome.org/YEAST/new-image?type=PATHWAY&object=$id PWY3O-214 unknown 1 urn:miriam:sgd.pathways ^PWY\w{2}\-\d{3}$
ScerTF scretf http://stormo.wustl.edu/ScerTF/details/$id/ RSC3 unknown 1 urn:miriam:scretf ^\w+$
Science Signaling Pathway sciencesignaling.path http://stke.sciencemag.org/cgi/cm/stkecm;$id CMP_18019 unknown 1 urn:miriam:sciencesignaling.path ^CMP_\d+$
Science Signaling Pathway-Dependent Component sciencesignaling.pdc http://stke.sciencemag.org/cgi/cm/stkecm;$id CMN_15494 unknown 1 urn:miriam:sciencesignaling.pdc ^CMN_\d+$
Science Signaling Pathway-Independent Component sciencesignaling.pic http://stke.sciencemag.org/cgi/cm/stkecm;$id CMC_15493 unknown 1 urn:miriam:sciencesignaling.pic ^CMC_\d+$
SCOP scop http://scop.bic.nus.edu.sg/search.cgi?sunid=$id 47419 unknown 1 urn:miriam:scop ^\d+$
Sequence Ontology so http://purl.bioontology.org/ontology/SO/$id SO:0000704 unknown 1 urn:miriam:so ^SO:\d{7}$
Sequence Read Archive insdc.sra http://trace.ddbj.nig.ac.jp/DRASearch/experiment?acc=$id SRX000007 unknown 1 urn:miriam:insdc.sra ^[SED]R[APRSXZ]\d{6}
SGD D http://www.yeastgenome.org/ http://www.yeastgenome.org/locus/$id S000028457 gene Saccharomyces cerevisiae 1 urn:miriam:sgd ^((S\d+$)|(Y[A-Z]{2}\d{3}[a-zA-Z](\-[A-Z])?))$ SGD
SIDER Drug sider.drug http://sideeffects.embl.de/drugs/$id/ 2244 unknown 1 urn:miriam:sider.drug ^\d+$
SIDER Side Effect sider.effect http://sideeffects.embl.de/se/$id/ C0017565 unknown 1 urn:miriam:sider.effect ^C\d+$
Signaling Gateway signaling-gateway http://www.signaling-gateway.org/molecule/query?afcsid=$id A001094 unknown 1 urn:miriam:signaling-gateway A\d{6}$
SitEx sitex http://www-bionet.sscc.ru/sitex/index.php?siteid=$id 1000 unknown 1 urn:miriam:sitex ^\d+$
Small Molecule Pathway Database Sm http://www.smpdb.ca/pathways http://pathman.smpdb.ca/pathways/$id/pathway SMP00001 pathway 1 urn:miriam:smpdb ^SMP\d{5}$ Small Molecule Pathway Database
SMART Sma http://smart.embl-heidelberg.de/ http://smart.embl-heidelberg.de/smart/do_annotation.pl?DOMAIN=$id SM00015 protein 1 urn:miriam:smart ^SM\d{5}$ SMART
SNOMED CT snomedct http://vtsl.vetmed.vt.edu/TerminologyMgt/Browser/ISA.cfm?SCT_ConceptID=$id 284196006 unknown 1 urn:miriam:snomedct ^(\w+)?\d+$
Sol Genomics Network sgn http://solgenomics.net/phenome/locus_display.pl?locus_id=$id 0001 unknown 1 urn:miriam:sgn ^\d+$
SoyBase soybase http://soybeanbreederstoolbox.org/search/search_results.php?category=SNP&search_term=$id BARC-013845-01256 unknown 1 urn:miriam:soybase ^\w+(\-)?\w+(\-)?\w+$
Spectral Database for Organic Compounds sdbs http://riodb01.ibase.aist.go.jp/sdbs/cgi-bin/cre_frame_disp.cgi?sdbsno=$id 4544 unknown 1 urn:miriam:sdbs \d+$
SPIKE Sk http://www.cs.tau.ac.il/~spike/ http://www.cs.tau.ac.il/~spike/maps/$id.html spike00001 interaction 1 urn:miriam:spike.map ^spike\d{5}$ SPIKE Map
SPRINT Spr http://www.bioinf.manchester.ac.uk/dbbrowser/sprint/ http://www.bioinf.manchester.ac.uk/cgi-bin/dbbrowser/sprint/searchprintss.cgi?prints_accn=$id&display_opts=Prints&category=None&queryform=false®expr=off PR00001 protein 1 urn:miriam:sprint ^PR\d{5}$ SPRINT
STAP stap http://psb.kobic.re.kr/STAP/refinement/result.php?search=$id 1a24 unknown 1 urn:miriam:stap ^[0-9][A-Za-z0-9]{3}$
STITCH stitch http://stitch.embl.de/interactions/$id ICXJVZHDZFXYQC unknown 1 urn:miriam:stitch ^\w{14}$
STRING Str http://string.embl.de/ http://string.embl.de/interactions/$id P53350 protein 1 urn:miriam:string ^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])|([0-9][A-Za-z0-9]{3})$ STRING
SubstrateDB Sdb http://substrate.burnham.org/ http://substrate.burnham.org/protein/annotation/$id/html 1915 protein 0 urn:miriam:pmap.substratedb ^\d+$ SubstrateDB
SubtiList subtilist http://genolist.pasteur.fr/SubtiList/genome.cgi?external_query+$id BG11523 unknown 1 urn:miriam:subtilist ^BG\d+$
SubtiWiki Bsu http://www.subtiwiki.uni-goettingen.de/wiki/index.php/Main_Page http://www.subtiwiki.uni-goettingen.de/wiki/index.php/$id BSU29180 gene Bacillus subtilis 1 urn:miriam:subtiwiki ^BSU\d{5}$ SubtiWiki
SUPFAM Sf http://supfam.org/SUPERFAMILY/ http://supfam.org/SUPERFAMILY/cgi-bin/scop.cgi?ipid=$id SSF57615 protein 1 urn:miriam:supfam ^\w+$ SUPFAM
SWISS-MODEL Sw http://swissmodel.expasy.org/ http://swissmodel.expasy.org/repository/smr.php?sptr_ac=$id P23298 protein 1 urn:miriam:swiss-model ^\w+$ SWISS-MODEL
Systems Biology Ontology Sbo http://www.ebi.ac.uk/sbo/ http://www.ebi.ac.uk/sbo/main/$id SBO:0000262 ontology 1 urn:miriam:biomodels.sbo ^SBO:\d{7}$ Systems Biology Ontology
T3DB t3db http://www.t3db.org/toxins/$id T3D0001 unknown 1 urn:miriam:t3db ^T3D\d+$
TAIR A http://arabidopsis.org/index.jsp http://arabidopsis.org/servlets/TairObject?type=locus&name=$id AT1G01030 gene 1 urn:miriam:tair.locus ^AT[1-5]G\d{5}$ TAIR Locus
TAIR Gene tair.gene http://arabidopsis.org/servlets/TairObject?accession=$id Gene:2200934 unknown 1 urn:miriam:tair.gene ^Gene:\d{7}$
TAIR Protein tair.protein http://arabidopsis.org/servlets/TairObject?accession=$id AASequence:1009107926 unknown 1 urn:miriam:tair.protein ^AASequence:\d{10}$
TarBase tarbase http://diana.cslab.ece.ntua.gr/DianaToolsNew/index.php?r=tarbase%2Findex&mirnas=$id hsa-let-7 unknown 1 urn:miriam:tarbase ^\w+\-\w+\-\w+
Taxonomy taxonomy http://purl.bioontology.org/ontology/NCBITAXON/obo:NCBITaxon_$id 9606 unknown 1 urn:miriam:taxonomy ^\d+$
TEDDY biomodels.teddy http://purl.bioontology.org/ontology/TEDDY/$id TEDDY_0000066 unknown 1 urn:miriam:biomodels.teddy ^TEDDY_\d{7}$
Tetrahymena Genome Database tgd http://ciliate.org/index.php/feature/details/$id TTHERM_00648910 unknown 1 urn:miriam:tgd ^TTHERM\_\d+$
TIGR Ti http://www.jcvi.org/ 12012.t00308 gene 1 TIGR
TIGRFAMS tigrfam http://www.jcvi.org/cgi-bin/tigrfams/HmmReportPage.cgi?acc=$id TIGR00010 unknown 1 urn:miriam:tigrfam ^TIGR\d+$
Tissue List tissuelist http://www.uniprot.org/tissues/$id TS-0285 unknown 1 urn:miriam:tissuelist ^TS-\d{4}$
TOPDB topdb http://topdb.enzim.hu/?m=show&id=$id AP00378 unknown 1 urn:miriam:topdb ^[A-Z0-9]+$
TopFind topfind http://clipserve.clip.ubc.ca/topfind/proteins/$id Q9UKQ2 unknown 1 urn:miriam:topfind ^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])$
ToxoDB toxoplasma http://toxodb.org/toxo/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$id TGME49_053730 unknown 1 urn:miriam:toxoplasma ^\w+$
Transport Classification Database tcdb http://www.tcdb.org/search/result.php?tc=$id 5.A.1.1.1 unknown 1 urn:miriam:tcdb ^\d+\.[A-Z]\.\d+\.\d+\.\d+$
Tree of Life tol http://tolweb.org/$id 98034 unknown 1 urn:miriam:tol ^\d+$
TreeBASE treebase http://purl.org/phylo/treebase/phylows/study/$id?format=html TB2:S1000 unknown 1 urn:miriam:treebase ^TB[1,2]?:[A-Z][a-z]?\d+$
TreeFam treefam http://www.treefam.org/family/$id TF101014 unknown 1 urn:miriam:treefam ^\w{1,2}\d+$
TrichDB trichdb http://trichdb.org/trichdb/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$id TVAG_386080 unknown 1 urn:miriam:trichdb ^\w+$
TriTrypDB tritrypdb http://tritrypdb.org/tritrypdb/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$id Tb927.8.620 unknown 1 urn:miriam:tritrypdb ^\w+(\.)?\w+(\.)?\w+
TTD Drug Td http://bidd.nus.edu.sg/group/cjttd/TTD_HOME.asp http://bidd.nus.edu.sg/group/cjttd/ZFTTDDRUG.asp?ID=$id DAP000773 metabolite 1 urn:miriam:ttd.drug ^DAP\d+$ TTD Drug
TTD Target Tt http://bidd.nus.edu.sg/group/cjttd/TTD_HOME.asp http://bidd.nus.edu.sg/group/cjttd/ZFTTDDetail.asp?ID=$id TTDS00056 protein 1 urn:miriam:ttd.target ^TTDS\d+$ TTD Target
TubercuList Tb http://tuberculist.epfl.ch http://tuberculist.epfl.ch/quicksearch.php?gene+name=$id Rv0064 gene Mycobacterium tuberculosis 1 urn:miriam:myco.tuber ^Rv\d{4}(A|B|c)?$ TubercuList
UBERON uberon http://purl.bioontology.org/ontology/UBERON/$id UBERON:0008203 unknown 1 urn:miriam:uberon ^UBERON\:\d+$
uBio NameBank ubio.namebank http://www.ubio.org/browser/details.php?namebankID=$id 2555646 unknown 1 urn:miriam:ubio.namebank ^\d+$
UCSC Genome Browser Uc http://genome.ucsc.edu/ http://genome.ucsc.edu/cgi-bin/hgTracks?position=$id uc001tyh.1 gene 1 uc\d{3}[a-z]{3}\.\d UCSC Genome Browser
UM-BBD Biotransformation Rule umbbd.rule http://www.umbbd.ethz.ch/servlets/rule.jsp?rule=$id bt0001 unknown 1 urn:miriam:umbbd.rule ^bt\d+$
UM-BBD Compound umbbd.compound http://umbbd.ethz.ch/servlets/pageservlet?ptype=c&compID=$id c0001 unknown 1 urn:miriam:umbbd.compound ^c\d+$
UM-BBD Enzyme umbbd.enzyme http://umbbd.ethz.ch/servlets/pageservlet?ptype=ep&enzymeID=$id e0333 unknown 1 urn:miriam:umbbd.enzyme ^e\d+$
UM-BBD Pathway umbbd.pathway http://umbbd.ethz.ch/servlets/pageservlet?ptype=p&pathway_abbr=$id ala unknown 1 urn:miriam:umbbd.pathway ^\w+$
UM-BBD Reaction umbbd.reaction http://umbbd.ethz.ch/servlets/pageservlet?ptype=r&reacID=$id r0001 unknown 1 urn:miriam:umbbd.reaction ^r\d+$
UniGene U http://www.ncbi.nlm.nih.gov/unigene http://www.ncbi.nlm.nih.gov/unigene?term=$id Hs.553708 gene 1 [A-Z][a-z][a-z]?\.\d+ UniGene
UniGene number unigene http://www.ncbi.nlm.nih.gov/unigene http://www.ncbi.nlm.nih.gov/unigene?UGID=$id 1548618 gene 1 urn:miriam:unigene ^\d+$
Unimod unimod http://www.unimod.org/modifications_view.php?editid1=$id 1200 unknown 1 urn:miriam:unimod ^\d+$
UniParc uniparc http://www.ebi.ac.uk/cgi-bin/dbfetch?db=uniparc&id=$id UPI000000000A unknown 1 urn:miriam:uniparc ^UPI[A-F0-9]{10}$
Unipathway Up http://www.grenoble.prabi.fr/obiwarehouse/unipathway http://www.grenoble.prabi.fr/obiwarehouse/unipathway/upa?upid=$id UPA00206 pathway 1 urn:miriam:unipathway ^UPA\d{5}$ Unipathway
Uniprot Enzyme Enzyme http://purl.uniprot.org/enzyme/$id unknown 1
UniProt Isoform uniprot.isoform http://www.uniprot.org/uniprot/$id Q5BJF6-3 unknown 1 urn:miriam:uniprot.isoform ^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])(\-\d+)$
Uniprot-SwissProt Sp http://www.uniprot.org/ http://www.uniprot.org/uniprot/$id CALM_HUMAN protein 1 ^[A-Z0-9]+_[A-Z]+$ UniProtKB/Swiss-Prot
Uniprot-TrEMBL S http://www.uniprot.org/ http://www.uniprot.org/uniprot/$id P62158 protein 1 urn:miriam:uniprot ^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])(\.\d+)?$ UniProtKB/TrEMBL
UniSTS unists http://www.ncbi.nlm.nih.gov/genome/sts/sts.cgi?uid=$id 456789 unknown 1 urn:miriam:unists ^\d+$
Unit Ontology unit http://purl.bioontology.org/ontology/UO/$id UO:0000080 unknown 1 urn:miriam:unit ^UO:\d{7}?
Unite unite http://unite.ut.ee/bl_forw.php?nimi=$id UDB000691 unknown 1 urn:miriam:unite ^UDB\d{6}$
VariO vario http://www.variationontology.org/cgi-bin/amivario/term-details.cgi?term=$id VariO:0294 unknown 1 urn:miriam:vario ^VariO:\d+$
Vbase2 vbase2 http://www.vbase2.org/vgene.php?id=$id humIGHV025 unknown 1 urn:miriam:vbase2 ^\w+$
VBRC vbrc http://vbrc.org/gene_detail.asp?gene_id=$id 35742 unknown 1 urn:miriam:vbrc ^\d+$
VectorBase vectorbase https://www.vectorbase.org/search/site/$id?site=Genome ISCW007415 unknown 1 urn:miriam:vectorbase ^\D{4}\d{6}(\-\D{2})?$
VFDB Gene vfdb.gene http://www.mgc.ac.cn/cgi-bin/VFs/gene.cgi?GeneID=$id VFG2154 unknown 1 urn:miriam:vfdb.gene ^\w+$
VFDB Genus vfdb.genus http://www.mgc.ac.cn/cgi-bin/VFs/genus.cgi?Genus=$id Chlamydia unknown 1 urn:miriam:vfdb.genus ^\w+$
ViPR Strain vipr http://www.viprbrc.org/brc/viprStrainDetails.do?strainName=$id&decorator=arena BeAn 70563 unknown 1 urn:miriam:vipr ^[A-Za-z 0-9]+$
ViralZone viralzone http://viralzone.expasy.org/all_by_protein/$id.html 992 unknown 1 urn:miriam:viralzone ^\d+$
VIRsiRNA virsirna http://crdd.osdd.net/servers/virsirnadb/record.php?details=$id virsi1909 unknown 1 urn:miriam:virsirna ^virsi\d+$
VMH metabolite VmhM https://registry.identifiers.org:/registry/vmhmetabolite http://identifiers.org/vmhmetabolite/$id h2o metabolite 1 urn:miriam:vmhmetabolite ^[a-zA-Z0-9_\(\_\)\[\]]+$ VMH Life_Metabolite
Wheat gene catalog Wc http://wheat.pw.usda.gov/ http://wheat.pw.usda.gov/sql?sql=select+distinct+genewgcreference.number+as+WGC,+reference.name+as+Reference,+reference.title+as+Title,+journal.name+as+Journal,+reference.volume+as+Volume,+reference.pages+as+Page+from+reference+inner+join+genewgcreference+on+genewgcreference.referenceid=reference.id+inner+join+journal+on+reference.journalid=journal.id+where+genewgcreference.number=$id 341 gene Triticum aestivum 1
Wheat gene names Wn http://wheat.pw.usda.gov/ http://wheat.pw.usda.gov/report?class=gene;name=$id 5S-Rrna-D1_(Triticum) gene Triticum aestivum 1 Wheat gene names
Wheat gene refs Wr http://wheat.pw.usda.gov/ http://wheat.pw.usda.gov/cgi-bin/graingenes/report.cgi?class=reference&name=$id WGS-95-1333 probe Triticum aestivum 0 Wheat gene refs
WikiGenes Wg http://www.wikigenes.org/ http://www.wikigenes.org/e/gene/e/$id.html 7157 gene 0 urn:miriam:wikigenes ^\d+$ WikiGenes
WikiPathways Wp http://www.wikipathways.org/ https://www.wikipathways.org/instance/$id WP100 pathway 1 urn:miriam:wikipathways WP\d{1,5}(\_r\d+)?$ WikiPathways
Wikipedia Wi http://www.wikipedia.org https://en.wikipedia.org/wiki/$id Acetate metabolite 1 urn:miriam:wikipedia.en ^[A-Za-z-0-9_]+$ Wikipedia
Worfdb worfdb http://worfdb.dfci.harvard.edu/index.php?search_type=name&page=showresultrc&race_query=$id T01B6.1 unknown 1 urn:miriam:worfdb ^\w+(\.\d+)?
WormBase W http://www.wormbase.org/ http://www.wormbase.org/db/gene/gene?name=$id;class=Gene WBGene00000001 gene Caenorhabditis elegans 1 urn:miriam:wb ^(WBGene\d{8}|([A-Z_a-z0-9]+(\.)?(t)?(\d+)?([a-z])?))$ WormBase
WormBase RNAi wormbase.rnai http://www.wormbase.org/species/c_elegans/rnai/$id WBRNAi00086878 unknown 1 urn:miriam:wormbase.rnai ^WBRNAi\d{8}$
Wormpep wormpep http://wormbase.sanger.ac.uk/db/seq/protein?name=WP%3A$id CE28239 unknown 1 urn:miriam:wormpep ^CE\d{5}$
Xenbase xenbase http://www.xenbase.org/gene/showgene.do?method=displayGeneSummary&geneId=$id 922462 unknown 1 urn:miriam:xenbase ^(XB-GENE-)?\d+$
YDPM ydpm http://www-deletion.stanford.edu/cgi-bin/YDPM/YDPM_search.cgi?thelist=$id YAL001C unknown 1 urn:miriam:ydpm ^Y[A-Z]{2}\d+[CW]$
Yeast Intron Database yid http://metarray.ucsc.edu/cgi-bin/intron/yirIntrondb?orfName=$id SNR17A unknown 1 urn:miriam:yid ^[A-Z0-9]+$
YeTFasCo yetfasco http://yetfasco.ccbr.utoronto.ca/showPFM.php?mot=$id YOR172W_571.0 unknown 1 urn:miriam:yetfasco ^\w+\_\d+(\.\d+)?$
YRC PDR yrcpdr http://yeastrc.org/pdr/viewProtein.do?id=$id 2673500 unknown 1 urn:miriam:yrcpdr ^\d+$
ZFIN Z http://zfin.org http://zfin.org/action/marker/view/$id ZDB-GENE-041118-11 gene Danio rerio 1 urn:miriam:zfin ZDB\-GENE\-\d+\-\d+ ZFIN Gene
ZFIN Expression zfin.expression http://zfin.org/action/genotype/show_all_expression?genoID=$id ZDB-GENO-980202-899 unknown 1 urn:miriam:zfin.expression ^ZDB\-GEN0\-\d+\-\d+$
ZFIN Phenotype zfin.phenotype http://zfin.org/action/genotype/show_all_phenotype?zdbID=$id ZDB-GENO-980202-899 unknown 1 urn:miriam:zfin.phenotype ^ZDB\-GEN0\-\d+\-\d+$