You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
In this analysis I will test if any of the QTLs distrupt conserved miRNA binding sites in conserved miRNA families. I will do this with a bed intersection starting with the QTLs.
```{bash,eval=F}
sed 's/^chr//' ../data/miRNAbinding/Targets_CS_pctiles.hg19.consFam.consSite.bed > ../data/miRNAbinding/Targets_CS_pctiles.hg19.consFam.consSite.NoChr.bed
sed '1d' ../data/apaQTLs/Nuclear_apaQTLs4pc_5fdr.WITHSTRAND.bed | sort -k1,1 -k2,2n > ../data/apaQTLs/Nuclear_apaQTLs4pc_5fdr.WITHSTRAND.sort.bed
sed '1d' ../data/apaQTLs/Total_apaQTLs4pc_5fdr.WITHSTRAND.bed | sort -k1,1 -k2,2n > ../data/apaQTLs/Total_apaQTLs4pc_5fdr.WITHSTRAND.sort.bed