v0.2.1

What's Changed

• Development by @briney in #10

Full Changelog: v0.2.0...v0.2.1

v0.2.0

What's Changed

• Development by @briney in #6

Full Changelog: v0.1.0...v0.2.0

v0.1.0

What's Changed

• Development by @briney in #5

Full Changelog: v0.0.6...v0.1.0

v0.0.6

Updates

• better defaults for filter_and_normalize()
• add an ignore_ig option to dimensionality_reduction() which ignores immunoglobulin genes during PCA, clustering and UMAP embedding
• added bar(), scatter() and umap() functions to scab.pl
• default obs field for assignments when using demultiplex() was changed to cellhash_assignment
• add a concat() method to scab.io which concatenates multiple AnnData objects
• general bugfixes

v0.0.5

Major documentation update

v0.0.4

minor bugfixes

v0.0.3

New features:

• Added a new calculate_agbc_confidence() function, which builds a probabilistic model of antigen barcode (AgBC) data using a control dataset and assigns confidence values for AgBC positivity.
• Added a new qc_metrics() plotting function, which produces percent Ig, percent mito, and gene counts plots to assist in determining appropriate threshold values for pre-processing.

v0.0.2

Update requirements (abutils must now be at least v0.2.5 to include the latest Pair object)

v0.0.1

Initial release