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Intergenome visualization plugin for Galaxy

This plugin is intended to visualize the output generated by the IslandCompare workflow.

Installation

  • Clone this repo into the configured Galaxy visualizations plugin folder (galaxy_root/config/plugins/visualizations/ by default).
  • Currently, the newly created folder must be named islandcompare for the IslandCompare front-end to find it. This should change in the future.
  • Restart Galaxy.

Galaxy automated deployment

If using the terraform recipes to deploy Galaxy, the module provides a means to automatically install visualizations. Host a url pointing at a location of the zipped "islandcompare" folder containing the built visualization. Pass it to the visualizations parameter of the Galaxy module. Currently the zip files are hosted in the "Releases" section of this repository.

Notes

To inject input.b64: sed -e '/<section id="injected_data" hidden="">/r ./input.b64'